miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 31289 0.66 0.843973
Target:  5'- cGCGuCGAGCGCGucgacgcuAGCcuuCAUCGCa -3'
miRNA:   3'- cUGUuGCUCGCGCuac-----UCGu--GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 31117 0.69 0.644178
Target:  5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3'
miRNA:   3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30926 0.7 0.610122
Target:  5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3'
miRNA:   3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5'
24302 5' -52.3 NC_005263.2 + 30434 0.77 0.258911
Target:  5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3'
miRNA:   3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 29972 0.67 0.776127
Target:  5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3'
miRNA:   3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5'
24302 5' -52.3 NC_005263.2 + 29818 0.78 0.220996
Target:  5'- uGCGAUGcAGCGCGcacgacGAGCGCAUCGCc -3'
miRNA:   3'- cUGUUGC-UCGCGCua----CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29326 0.73 0.417457
Target:  5'- cGCGGCGAGCaCGAUaaccagcgcGAGCACcgCGCc -3'
miRNA:   3'- cUGUUGCUCGcGCUA---------CUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 29283 0.69 0.665711
Target:  5'- cGGCAAUGAGCugcacgGCGGccgGGucggcauGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCUCG------CGCUa--CU-------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29240 0.67 0.796482
Target:  5'- cGCAGCG-GCGCGccGAgGCACG-CGUu -3'
miRNA:   3'- cUGUUGCuCGCGCuaCU-CGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 29065 0.66 0.834907
Target:  5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3'
miRNA:   3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5'
24302 5' -52.3 NC_005263.2 + 28802 0.66 0.806391
Target:  5'- cGCAucCGGGCGCGucacggugaccGUGAcGCGCA-CGCg -3'
miRNA:   3'- cUGUu-GCUCGCGC-----------UACU-CGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 26794 0.71 0.531799
Target:  5'- cGACGGCGuuCGUGAacccGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCucGCGCUacu-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 26454 0.67 0.769893
Target:  5'- aGCAGCGcuugguGCGCGAgugccauacgccGCGCGUCGCc -3'
miRNA:   3'- cUGUUGCu-----CGCGCUacu---------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 26200 0.69 0.644178
Target:  5'- cGCGGCGGccGCGCGAUGcGGCgGCcguUCGCg -3'
miRNA:   3'- cUGUUGCU--CGCGCUAC-UCG-UGu--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 26078 0.69 0.689367
Target:  5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3'
miRNA:   3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 25698 0.66 0.816106
Target:  5'- cACGGCGAGCacgGCGgcGcGUACGuUCGCg -3'
miRNA:   3'- cUGUUGCUCG---CGCuaCuCGUGU-AGCG- -5'
24302 5' -52.3 NC_005263.2 + 25556 0.67 0.776127
Target:  5'- uGAUcGCGAGCGCGAcGucGGCGuCcgCGCc -3'
miRNA:   3'- -CUGuUGCUCGCGCUaC--UCGU-GuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 25188 0.67 0.776127
Target:  5'- --gGACGGGCGCGcagcuUGGGCACcucCGUc -3'
miRNA:   3'- cugUUGCUCGCGCu----ACUCGUGua-GCG- -5'
24302 5' -52.3 NC_005263.2 + 24949 0.72 0.478118
Target:  5'- gGACGGCGGuGCGCGGUucGCAgAUCGg -3'
miRNA:   3'- -CUGUUGCU-CGCGCUAcuCGUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 24684 0.76 0.31138
Target:  5'- aACAuCGAGCGC-AUGAGCGCGUUGa -3'
miRNA:   3'- cUGUuGCUCGCGcUACUCGUGUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.