Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 18936 | 0.66 | 0.825615 |
Target: 5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3' miRNA: 3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 17617 | 0.66 | 0.833988 |
Target: 5'- uGACGAUcaaaacgucgccaGGGCGCcgGAUGuGGCGCAaCGCg -3' miRNA: 3'- -CUGUUG-------------CUCGCG--CUAC-UCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 17588 | 0.67 | 0.773017 |
Target: 5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 16380 | 0.67 | 0.78639 |
Target: 5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 16350 | 0.69 | 0.644178 |
Target: 5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3' miRNA: 3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15495 | 0.75 | 0.319388 |
Target: 5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3' miRNA: 3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15486 | 0.77 | 0.259597 |
Target: 5'- uGCGGCG-GCGCGGUGAGCAUca-GCa -3' miRNA: 3'- cUGUUGCuCGCGCUACUCGUGuagCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15186 | 0.69 | 0.689367 |
Target: 5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3' miRNA: 3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 14366 | 0.66 | 0.834907 |
Target: 5'- uGACGACGGGCcCGAUGccgGGC-CGcUCGUc -3' miRNA: 3'- -CUGUUGCUCGcGCUAC---UCGuGU-AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 14056 | 0.74 | 0.379717 |
Target: 5'- cGCGuCGAGCGCauUGAGCGCGcCGCg -3' miRNA: 3'- cUGUuGCUCGCGcuACUCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 13859 | 0.67 | 0.765706 |
Target: 5'- gGGCAGCu-GCGCGAgcAGCACAagCGUa -3' miRNA: 3'- -CUGUUGcuCGCGCUacUCGUGUa-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 13394 | 0.66 | 0.816106 |
Target: 5'- gGAC-ACGAuCGUG-UGcaGGCGCGUCGCa -3' miRNA: 3'- -CUGuUGCUcGCGCuAC--UCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 12069 | 0.67 | 0.755138 |
Target: 5'- cGACcgaGACGGGCGCGAguaccuuGU-CGUCGCg -3' miRNA: 3'- -CUG---UUGCUCGCGCUacu----CGuGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 12019 | 0.68 | 0.733614 |
Target: 5'- cGCGACG-GCGCGcucaagcuUGcgccGGUACAUCGCu -3' miRNA: 3'- cUGUUGCuCGCGCu-------AC----UCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 11888 | 0.68 | 0.700547 |
Target: 5'- uGACGACGcGGCGCc--GGGCGCcugCGCg -3' miRNA: 3'- -CUGUUGC-UCGCGcuaCUCGUGua-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10946 | 0.69 | 0.655522 |
Target: 5'- uGCGGggUGAGCGCuucGAGCACAccUCGCa -3' miRNA: 3'- cUGUU--GCUCGCGcuaCUCGUGU--AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10881 | 0.7 | 0.5875 |
Target: 5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3' miRNA: 3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10744 | 0.69 | 0.655522 |
Target: 5'- aGACu-CGAGCGCaucGAGCACGgcCGCg -3' miRNA: 3'- -CUGuuGCUCGCGcuaCUCGUGUa-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10690 | 0.79 | 0.187395 |
Target: 5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3' miRNA: 3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 10287 | 0.68 | 0.722684 |
Target: 5'- cGGCGACauGAGCGCcgGAUGcGCGCccGUCGUc -3' miRNA: 3'- -CUGUUG--CUCGCG--CUACuCGUG--UAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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