miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 37841 0.81 0.149643
Target:  5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3'
miRNA:   3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 12069 0.67 0.755138
Target:  5'- cGACcgaGACGGGCGCGAguaccuuGU-CGUCGCg -3'
miRNA:   3'- -CUG---UUGCUCGCGCUacu----CGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20180 0.81 0.137362
Target:  5'- cGACGACGAGCGCGccGGGCGacgCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5'
24302 5' -52.3 NC_005263.2 + 32584 1.11 0.001233
Target:  5'- gGACAACGAGCGCGAUGAGCACAUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCUACUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 21423 0.66 0.825615
Target:  5'- cGCAuuACGuGCGCaucaAUGGGCGgcCGUCGCg -3'
miRNA:   3'- cUGU--UGCuCGCGc---UACUCGU--GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47997 0.66 0.843973
Target:  5'- uACAACGAcuuggauauGCGCGAcGAcCGCAaucUCGCa -3'
miRNA:   3'- cUGUUGCU---------CGCGCUaCUcGUGU---AGCG- -5'
24302 5' -52.3 NC_005263.2 + 21207 0.79 0.192665
Target:  5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3'
miRNA:   3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 22154 0.66 0.806391
Target:  5'- -uCGACG-GCGCGAcGcuCGCAUUGCg -3'
miRNA:   3'- cuGUUGCuCGCGCUaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47446 0.67 0.78639
Target:  5'- uACGAUGAgGCGUucGAucUGgccGGCACGUCGCg -3'
miRNA:   3'- cUGUUGCU-CGCG--CU--AC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 26454 0.67 0.769893
Target:  5'- aGCAGCGcuugguGCGCGAgugccauacgccGCGCGUCGCc -3'
miRNA:   3'- cUGUUGCu-----CGCGCUacu---------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42122 0.68 0.733614
Target:  5'- gGAUAGCGucgugcuGCGCGAcGAgGCGUGUCGCg -3'
miRNA:   3'- -CUGUUGCu------CGCGCUaCU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 4614 0.66 0.825615
Target:  5'- cGGCAGCuucgaGGUGcCGuaauUGAGCGcCAUCGCg -3'
miRNA:   3'- -CUGUUGc----UCGC-GCu---ACUCGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10287 0.68 0.722684
Target:  5'- cGGCGACauGAGCGCcgGAUGcGCGCccGUCGUc -3'
miRNA:   3'- -CUGUUG--CUCGCG--CUACuCGUG--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 35466 0.69 0.678128
Target:  5'- uGACAGCGGGCGCcGAaaccGA-CGuCGUCGCa -3'
miRNA:   3'- -CUGUUGCUCGCG-CUa---CUcGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 2092 0.69 0.640772
Target:  5'- cGGCAGCGAGUuguagGCGAgcaucgccucgaacUcGGCACGUUGCa -3'
miRNA:   3'- -CUGUUGCUCG-----CGCU--------------AcUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42913 0.72 0.499292
Target:  5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29326 0.73 0.417457
Target:  5'- cGCGGCGAGCaCGAUaaccagcgcGAGCACcgCGCc -3'
miRNA:   3'- cUGUUGCUCGcGCUA---------CUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 6617 0.76 0.288276
Target:  5'- cGGCGGCGcgcucGGCGCGGUcGAGCA-GUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGCUA-CUCGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 6521 0.66 0.810301
Target:  5'- aACAGCGAaagcggcgcgcauacGCGCGAa-AGCucGCAUCGCc -3'
miRNA:   3'- cUGUUGCU---------------CGCGCUacUCG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 43588 0.69 0.671361
Target:  5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3'
miRNA:   3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.