miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 43588 0.69 0.671361
Target:  5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3'
miRNA:   3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 7304 0.67 0.785371
Target:  5'- uGCGGCcaggucuGCGCGAUGcGCucgaucaGCAUCGCg -3'
miRNA:   3'- cUGUUGcu-----CGCGCUACuCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 23447 0.67 0.780252
Target:  5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3'
miRNA:   3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 18936 0.66 0.825615
Target:  5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3'
miRNA:   3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 24197 0.67 0.776127
Target:  5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3'
miRNA:   3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 1230 0.73 0.447216
Target:  5'- cGGgGACGAGCGCGAUGucauccGGC-CAggaugCGCg -3'
miRNA:   3'- -CUgUUGCUCGCGCUAC------UCGuGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 39694 0.69 0.689367
Target:  5'- cGAUggGGCGAGCGCGAgcUGgaaauggccGGCGCGggcCGCg -3'
miRNA:   3'- -CUG--UUGCUCGCGCU--AC---------UCGUGUa--GCG- -5'
24302 5' -52.3 NC_005263.2 + 15186 0.69 0.689367
Target:  5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 37920 0.68 0.711657
Target:  5'- aACAGCGGGCGCa---GGCGCGcCGCc -3'
miRNA:   3'- cUGUUGCUCGCGcuacUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 26078 0.69 0.689367
Target:  5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3'
miRNA:   3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 23895 0.72 0.499292
Target:  5'- -uCAACG-GCGCGcUGAaccaggucgcGCGCAUCGCu -3'
miRNA:   3'- cuGUUGCuCGCGCuACU----------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 24949 0.72 0.478118
Target:  5'- gGACGGCGGuGCGCGGUucGCAgAUCGg -3'
miRNA:   3'- -CUGUUGCU-CGCGCUAcuCGUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 32099 0.73 0.407808
Target:  5'- cGGCGGCGucGGUGCGAUcGAGCGCuUCGa -3'
miRNA:   3'- -CUGUUGC--UCGCGCUA-CUCGUGuAGCg -5'
24302 5' -52.3 NC_005263.2 + 33466 0.74 0.388936
Target:  5'- cGGCgGACGAGCGCGuAUG-GCugAUCGa -3'
miRNA:   3'- -CUG-UUGCUCGCGC-UACuCGugUAGCg -5'
24302 5' -52.3 NC_005263.2 + 38538 0.75 0.325085
Target:  5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3'
miRNA:   3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 15495 0.75 0.319388
Target:  5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3'
miRNA:   3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37810 0.75 0.319388
Target:  5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38625 0.76 0.303526
Target:  5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3'
miRNA:   3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30434 0.77 0.258911
Target:  5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3'
miRNA:   3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 10690 0.79 0.187395
Target:  5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.