miRNA display CGI


Results 81 - 100 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 6462 0.71 0.55389
Target:  5'- aGCAcgaGCGAGCGCG-UGGGcCGCAgUGCa -3'
miRNA:   3'- cUGU---UGCUCGCGCuACUC-GUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 2798 0.7 0.576245
Target:  5'- gGGCugguCGAGUGCcAUGAGCACcgaguauUCGCa -3'
miRNA:   3'- -CUGuu--GCUCGCGcUACUCGUGu------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 10881 0.7 0.5875
Target:  5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3'
miRNA:   3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30926 0.7 0.610122
Target:  5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3'
miRNA:   3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5'
24302 5' -52.3 NC_005263.2 + 46831 0.7 0.621467
Target:  5'- cGCAACGcgcgccaggcGGCGCGccaagGAGCACGUCa- -3'
miRNA:   3'- cUGUUGC----------UCGCGCua---CUCGUGUAGcg -5'
24302 5' -52.3 NC_005263.2 + 9603 0.69 0.632823
Target:  5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 32099 0.73 0.407808
Target:  5'- cGGCGGCGucGGUGCGAUcGAGCGCuUCGa -3'
miRNA:   3'- -CUGUUGC--UCGCGCUA-CUCGUGuAGCg -5'
24302 5' -52.3 NC_005263.2 + 33466 0.74 0.388936
Target:  5'- cGGCgGACGAGCGCGuAUG-GCugAUCGa -3'
miRNA:   3'- -CUG-UUGCUCGCGC-UACuCGugUAGCg -5'
24302 5' -52.3 NC_005263.2 + 38538 0.75 0.325085
Target:  5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3'
miRNA:   3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 39694 0.69 0.689367
Target:  5'- cGAUggGGCGAGCGCGAgcUGgaaauggccGGCGCGggcCGCg -3'
miRNA:   3'- -CUG--UUGCUCGCGCU--AC---------UCGUGUa--GCG- -5'
24302 5' -52.3 NC_005263.2 + 26078 0.69 0.689367
Target:  5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3'
miRNA:   3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5'
24302 5' -52.3 NC_005263.2 + 43178 0.69 0.686001
Target:  5'- aGACGcaguACG-GCGCGAUGuuuuggauggcgacGGCGCGcuaUCGCa -3'
miRNA:   3'- -CUGU----UGCuCGCGCUAC--------------UCGUGU---AGCG- -5'
24302 5' -52.3 NC_005263.2 + 43588 0.69 0.671361
Target:  5'- uGACGAUGGGCuacgacgcggaagucGCGAUGGGcCAgAUCGg -3'
miRNA:   3'- -CUGUUGCUCG---------------CGCUACUC-GUgUAGCg -5'
24302 5' -52.3 NC_005263.2 + 23895 0.72 0.499292
Target:  5'- -uCAACG-GCGCGcUGAaccaggucgcGCGCAUCGCu -3'
miRNA:   3'- cuGUUGCuCGCGCuACU----------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10690 0.79 0.187395
Target:  5'- uGACGACGAggacggccGCGCGAcgcGAuGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCU--------CGCGCUa--CU-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29818 0.78 0.220996
Target:  5'- uGCGAUGcAGCGCGcacgacGAGCGCAUCGCc -3'
miRNA:   3'- cUGUUGC-UCGCGCua----CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30434 0.77 0.258911
Target:  5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3'
miRNA:   3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 38625 0.76 0.303526
Target:  5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3'
miRNA:   3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37810 0.75 0.319388
Target:  5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 15495 0.75 0.319388
Target:  5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3'
miRNA:   3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.