miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 38538 0.75 0.325085
Target:  5'- gGGCAGCGAGCGCGccgccuggcaagccGcGAGCGCcgCGUc -3'
miRNA:   3'- -CUGUUGCUCGCGC--------------UaCUCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 15495 0.75 0.319388
Target:  5'- cGACAuccGCGAGCucaagacgcucgGCGAUGuGCuCAUCGCg -3'
miRNA:   3'- -CUGU---UGCUCG------------CGCUACuCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 37810 0.75 0.319388
Target:  5'- uGACGACGGGCGCGcauccGGCGCucauGUCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuac--UCGUG----UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38625 0.76 0.303526
Target:  5'- gGAUAGCGccGGCGCGaAUGaAGcCGCGUCGCg -3'
miRNA:   3'- -CUGUUGC--UCGCGC-UAC-UC-GUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 30434 0.77 0.258911
Target:  5'- uGCGGuCGAGCGCGAgcagcgUGAGCGCGgcggccuUCGCg -3'
miRNA:   3'- cUGUU-GCUCGCGCU------ACUCGUGU-------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 26794 0.71 0.531799
Target:  5'- cGACGGCGuuCGUGAacccGCACGUCGCg -3'
miRNA:   3'- -CUGUUGCucGCGCUacu-CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47931 0.71 0.542808
Target:  5'- gGGCAGCGGGCuCGccccGGGCGCGgaUCGCg -3'
miRNA:   3'- -CUGUUGCUCGcGCua--CUCGUGU--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 2798 0.7 0.576245
Target:  5'- gGGCugguCGAGUGCcAUGAGCACcgaguauUCGCa -3'
miRNA:   3'- -CUGuu--GCUCGCGcUACUCGUGu------AGCG- -5'
24302 5' -52.3 NC_005263.2 + 22537 0.69 0.666842
Target:  5'- --uGACGGGCgGCGcgGAcGCcgACGUCGCg -3'
miRNA:   3'- cugUUGCUCG-CGCuaCU-CG--UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20352 0.69 0.655522
Target:  5'- cGCAccucGgGGGCGCGcAUG-GCugAUCGCg -3'
miRNA:   3'- cUGU----UgCUCGCGC-UACuCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 10744 0.69 0.655522
Target:  5'- aGACu-CGAGCGCaucGAGCACGgcCGCg -3'
miRNA:   3'- -CUGuuGCUCGCGcuaCUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 10946 0.69 0.655522
Target:  5'- uGCGGggUGAGCGCuucGAGCACAccUCGCa -3'
miRNA:   3'- cUGUU--GCUCGCGcuaCUCGUGU--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 26200 0.69 0.644178
Target:  5'- cGCGGCGGccGCGCGAUGcGGCgGCcguUCGCg -3'
miRNA:   3'- cUGUUGCU--CGCGCUAC-UCG-UGu--AGCG- -5'
24302 5' -52.3 NC_005263.2 + 16350 0.69 0.644178
Target:  5'- cGACGagACGaAGCGCGcgGc-CGCGUCGCu -3'
miRNA:   3'- -CUGU--UGC-UCGCGCuaCucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 45473 0.69 0.644178
Target:  5'- -cCGGCaAGCGCGAUGAaccGCGCggucggccuGUCGCg -3'
miRNA:   3'- cuGUUGcUCGCGCUACU---CGUG---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 31117 0.69 0.644178
Target:  5'- cGACAcCcGGCGgGAUGAGCGaaaugaugaaGUCGCg -3'
miRNA:   3'- -CUGUuGcUCGCgCUACUCGUg---------UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 9603 0.69 0.632823
Target:  5'- uGCGGC-AGCGCGAUcauCGCGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUAcucGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 46831 0.7 0.621467
Target:  5'- cGCAACGcgcgccaggcGGCGCGccaagGAGCACGUCa- -3'
miRNA:   3'- cUGUUGC----------UCGCGCua---CUCGUGUAGcg -5'
24302 5' -52.3 NC_005263.2 + 30926 0.7 0.610122
Target:  5'- cGACGGCGuacGCGCGAgcuGCGCAUUcgGCu -3'
miRNA:   3'- -CUGUUGCu--CGCGCUacuCGUGUAG--CG- -5'
24302 5' -52.3 NC_005263.2 + 10881 0.7 0.5875
Target:  5'- cGGCAcCGGcGCGCGucGUGAGCGgcgUAUCGCc -3'
miRNA:   3'- -CUGUuGCU-CGCGC--UACUCGU---GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.