miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 21281 0.67 0.765706
Target:  5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3'
miRNA:   3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7304 0.67 0.785371
Target:  5'- uGCGGCcaggucuGCGCGAUGcGCucgaucaGCAUCGCg -3'
miRNA:   3'- cUGUUGcu-----CGCGCUACuCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 23447 0.67 0.780252
Target:  5'- -uCGGCGAuCGgGGUGAGUgcuaugucgguuacgACAUCGCg -3'
miRNA:   3'- cuGUUGCUcGCgCUACUCG---------------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 24197 0.67 0.776127
Target:  5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3'
miRNA:   3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 38901 0.67 0.776127
Target:  5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3'
miRNA:   3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 38387 0.67 0.776127
Target:  5'- uGGCgAACGAGCGCa---AGCGCGcCGCa -3'
miRNA:   3'- -CUG-UUGCUCGCGcuacUCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 29972 0.67 0.776127
Target:  5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3'
miRNA:   3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5'
24302 5' -52.3 NC_005263.2 + 25188 0.67 0.776127
Target:  5'- --gGACGGGCGCGcagcuUGGGCACcucCGUc -3'
miRNA:   3'- cugUUGCUCGCGCu----ACUCGUGua-GCG- -5'
24302 5' -52.3 NC_005263.2 + 17588 0.67 0.773017
Target:  5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3'
miRNA:   3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 16380 0.67 0.78639
Target:  5'- cGGCGGCG-GCcUGAUGAaGCuggccgGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCGcGCUACU-CG------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20130 0.66 0.806391
Target:  5'- uACGGCaAGCGCGAcgGuacGGC-CGUCGCg -3'
miRNA:   3'- cUGUUGcUCGCGCUa-C---UCGuGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 36075 0.66 0.806391
Target:  5'- aGCGAUGuaccGGCGCaagcuUGAGCGCgccGUCGCg -3'
miRNA:   3'- cUGUUGC----UCGCGcu---ACUCGUG---UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 41564 0.66 0.834907
Target:  5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3'
miRNA:   3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5'
24302 5' -52.3 NC_005263.2 + 29065 0.66 0.834907
Target:  5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3'
miRNA:   3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5'
24302 5' -52.3 NC_005263.2 + 20675 0.66 0.833988
Target:  5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3'
miRNA:   3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5'
24302 5' -52.3 NC_005263.2 + 9527 0.66 0.825615
Target:  5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3'
miRNA:   3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 47401 0.66 0.825615
Target:  5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3'
miRNA:   3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 18936 0.66 0.825615
Target:  5'- cGGC-ACGAGCGCuc-GAGCGCGcCGg -3'
miRNA:   3'- -CUGuUGCUCGCGcuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 42825 0.66 0.806391
Target:  5'- --aAGCGAGaCGCcuGAUGAGCACGccccCGUa -3'
miRNA:   3'- cugUUGCUC-GCG--CUACUCGUGUa---GCG- -5'
24302 5' -52.3 NC_005263.2 + 21245 0.66 0.806391
Target:  5'- -uCGACG-GCGCGGUGcGCGCcacguAUUGCc -3'
miRNA:   3'- cuGUUGCuCGCGCUACuCGUG-----UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.