Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 47401 | 0.66 | 0.825615 |
Target: 5'- cACGGCGcuCGCGGgcgGcGGCACgAUCGCg -3' miRNA: 3'- cUGUUGCucGCGCUa--C-UCGUG-UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 9527 | 0.66 | 0.825615 |
Target: 5'- cGCcgUGAGCGCGucgGAcgGCaacGCGUCGCa -3' miRNA: 3'- cUGuuGCUCGCGCua-CU--CG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20675 | 0.66 | 0.833988 |
Target: 5'- cGCAGuguuugcCGAGCGCGAcGcgacAGCAC-UCGCu -3' miRNA: 3'- cUGUU-------GCUCGCGCUaC----UCGUGuAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29065 | 0.66 | 0.834907 |
Target: 5'- cACGACGcggcccgcuacGGCGCGAUaGGCGCGguucaGCg -3' miRNA: 3'- cUGUUGC-----------UCGCGCUAcUCGUGUag---CG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 41564 | 0.66 | 0.834907 |
Target: 5'- uGGCGGCGAugcgagcuuucGCGCGuAUGcGCGCcgcuuUCGCu -3' miRNA: 3'- -CUGUUGCU-----------CGCGC-UACuCGUGu----AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24197 | 0.67 | 0.776127 |
Target: 5'- cGACGgucacgcucGCGGGCGCGcucacGAGCGCGcucaCGCu -3' miRNA: 3'- -CUGU---------UGCUCGCGCua---CUCGUGUa---GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38901 | 0.67 | 0.776127 |
Target: 5'- cGGCAccgucACGAGCaagccggcgccGCGccGAGCucgACGUCGCg -3' miRNA: 3'- -CUGU-----UGCUCG-----------CGCuaCUCG---UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 26078 | 0.69 | 0.689367 |
Target: 5'- uGGCGcACGuGCGCauaGAGCGCGUCGa -3' miRNA: 3'- -CUGU-UGCuCGCGcuaCUCGUGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 39694 | 0.69 | 0.689367 |
Target: 5'- cGAUggGGCGAGCGCGAgcUGgaaauggccGGCGCGggcCGCg -3' miRNA: 3'- -CUG--UUGCUCGCGCU--AC---------UCGUGUa--GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15186 | 0.69 | 0.689367 |
Target: 5'- cGAC-GCGAGCGCGccGcGCgACGUCGg -3' miRNA: 3'- -CUGuUGCUCGCGCuaCuCG-UGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37920 | 0.68 | 0.711657 |
Target: 5'- aACAGCGGGCGCa---GGCGCGcCGCc -3' miRNA: 3'- cUGUUGCUCGCGcuacUCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 6502 | 0.68 | 0.733614 |
Target: 5'- cGACgAACG-GCGCGuUGAaGCcggucgugaGCAUCGCg -3' miRNA: 3'- -CUG-UUGCuCGCGCuACU-CG---------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 40447 | 0.68 | 0.744437 |
Target: 5'- uACAGCGGGCGUGu---GCGCGaUGCg -3' miRNA: 3'- cUGUUGCUCGCGCuacuCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21165 | 0.68 | 0.744437 |
Target: 5'- cGGCAGCGAcgucaucaacguGCGUGgcGAGCuguuccgcauccGCGUUGCa -3' miRNA: 3'- -CUGUUGCU------------CGCGCuaCUCG------------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 36682 | 0.68 | 0.744437 |
Target: 5'- uGGCAGCauucGAGCGCGGgcaagGAGC-CG-CGCc -3' miRNA: 3'- -CUGUUG----CUCGCGCUa----CUCGuGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21281 | 0.67 | 0.765706 |
Target: 5'- -uCGAUGAGgcaguCGCaugGAUGAGUugAUCGCg -3' miRNA: 3'- cuGUUGCUC-----GCG---CUACUCGugUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 17588 | 0.67 | 0.773017 |
Target: 5'- cGGCGGCGgccaaGGCGCGcagggcaucuuccaGUGGcGCGgGUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGC--------------UACU-CGUgUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 25188 | 0.67 | 0.776127 |
Target: 5'- --gGACGGGCGCGcagcuUGGGCACcucCGUc -3' miRNA: 3'- cugUUGCUCGCGCu----ACUCGUGua-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29972 | 0.67 | 0.776127 |
Target: 5'- aGCGGCGggcAGCGCGAUcAGCGCGUa-- -3' miRNA: 3'- cUGUUGC---UCGCGCUAcUCGUGUAgcg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 38387 | 0.67 | 0.776127 |
Target: 5'- uGGCgAACGAGCGCa---AGCGCGcCGCa -3' miRNA: 3'- -CUG-UUGCUCGCGcuacUCGUGUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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