Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24302 | 5' | -52.3 | NC_005263.2 | + | 36682 | 0.68 | 0.744437 |
Target: 5'- uGGCAGCauucGAGCGCGGgcaagGAGC-CG-CGCc -3' miRNA: 3'- -CUGUUG----CUCGCGCUa----CUCGuGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21165 | 0.68 | 0.744437 |
Target: 5'- cGGCAGCGAcgucaucaacguGCGUGgcGAGCuguuccgcauccGCGUUGCa -3' miRNA: 3'- -CUGUUGCU------------CGCGCuaCUCG------------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 14056 | 0.74 | 0.379717 |
Target: 5'- cGCGuCGAGCGCauUGAGCGCGcCGCg -3' miRNA: 3'- cUGUuGCUCGCGcuACUCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 29326 | 0.73 | 0.417457 |
Target: 5'- cGCGGCGAGCaCGAUaaccagcgcGAGCACcgCGCc -3' miRNA: 3'- cUGUUGCUCGcGCUA---------CUCGUGuaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 47500 | 0.73 | 0.437164 |
Target: 5'- -cCAGcCGAuuGCGCGA--AGCACAUCGCg -3' miRNA: 3'- cuGUU-GCU--CGCGCUacUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 40765 | 0.73 | 0.450257 |
Target: 5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3' miRNA: 3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 42913 | 0.72 | 0.499292 |
Target: 5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3' miRNA: 3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 46956 | 0.71 | 0.541703 |
Target: 5'- cGCGACGGGCGCacuacuuucGAGCggguugaGCAUCGCa -3' miRNA: 3'- cUGUUGCUCGCGcua------CUCG-------UGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37084 | 0.7 | 0.618062 |
Target: 5'- gGACAGC-AGCGCGAUc-GCACAcaugacggaggguuUCGCa -3' miRNA: 3'- -CUGUUGcUCGCGCUAcuCGUGU--------------AGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 33677 | 0.69 | 0.632823 |
Target: 5'- ---uGCGGGCGCGAaucuUG-GCGCAgCGCg -3' miRNA: 3'- cuguUGCUCGCGCU----ACuCGUGUaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 19102 | 0.75 | 0.344332 |
Target: 5'- cGCAACGcacugccggucGGcCGCGccGAGCGCAUCGCc -3' miRNA: 3'- cUGUUGC-----------UC-GCGCuaCUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 24684 | 0.76 | 0.31138 |
Target: 5'- aACAuCGAGCGC-AUGAGCGCGUUGa -3' miRNA: 3'- cUGUuGCUCGCGcUACUCGUGUAGCg -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 31289 | 0.66 | 0.843973 |
Target: 5'- cGCGuCGAGCGCGucgacgcuAGCcuuCAUCGCa -3' miRNA: 3'- cUGUuGCUCGCGCuac-----UCGu--GUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 20180 | 0.81 | 0.137362 |
Target: 5'- cGACGACGAGCGCGccGGGCGacgCGCc -3' miRNA: 3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 37841 | 0.81 | 0.149643 |
Target: 5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3' miRNA: 3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 19871 | 0.81 | 0.149643 |
Target: 5'- cACGGCGAGCGCGgcGAGCGCGgccgaUGCa -3' miRNA: 3'- cUGUUGCUCGCGCuaCUCGUGUa----GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 21207 | 0.79 | 0.192665 |
Target: 5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3' miRNA: 3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 23887 | 0.77 | 0.246151 |
Target: 5'- cGACAAgcgUGAGCGCGcucGUGAGCGCGccCGCg -3' miRNA: 3'- -CUGUU---GCUCGCGC---UACUCGUGUa-GCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 15486 | 0.77 | 0.259597 |
Target: 5'- uGCGGCG-GCGCGGUGAGCAUca-GCa -3' miRNA: 3'- cUGUUGCuCGCGCUACUCGUGuagCG- -5' |
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24302 | 5' | -52.3 | NC_005263.2 | + | 6617 | 0.76 | 0.288276 |
Target: 5'- cGGCGGCGcgcucGGCGCGGUcGAGCA-GUCGCg -3' miRNA: 3'- -CUGUUGC-----UCGCGCUA-CUCGUgUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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