miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24302 5' -52.3 NC_005263.2 + 23887 0.77 0.246151
Target:  5'- cGACAAgcgUGAGCGCGcucGUGAGCGCGccCGCg -3'
miRNA:   3'- -CUGUU---GCUCGCGC---UACUCGUGUa-GCG- -5'
24302 5' -52.3 NC_005263.2 + 21207 0.79 0.192665
Target:  5'- gGGCGAgUGGGUGCGuuucGAGCGCGUCGCa -3'
miRNA:   3'- -CUGUU-GCUCGCGCua--CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 19871 0.81 0.149643
Target:  5'- cACGGCGAGCGCGgcGAGCGCGgccgaUGCa -3'
miRNA:   3'- cUGUUGCUCGCGCuaCUCGUGUa----GCG- -5'
24302 5' -52.3 NC_005263.2 + 37841 0.81 0.149643
Target:  5'- --aAGCG-GCGCGAUGcgaAGCGCAUCGCg -3'
miRNA:   3'- cugUUGCuCGCGCUAC---UCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 20180 0.81 0.137362
Target:  5'- cGACGACGAGCGCGccGGGCGacgCGCc -3'
miRNA:   3'- -CUGUUGCUCGCGCuaCUCGUguaGCG- -5'
24302 5' -52.3 NC_005263.2 + 40765 0.73 0.450257
Target:  5'- cGGCGGCG-GCaagucgcuccugaacGCGAUgcugaucGAGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCuCG---------------CGCUA-------CUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 42913 0.72 0.499292
Target:  5'- gGAC-GCGAGUGCGc-GAGCAagaAUCGCu -3'
miRNA:   3'- -CUGuUGCUCGCGCuaCUCGUg--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 46956 0.71 0.541703
Target:  5'- cGCGACGGGCGCacuacuuucGAGCggguugaGCAUCGCa -3'
miRNA:   3'- cUGUUGCUCGCGcua------CUCG-------UGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 387 0.68 0.733614
Target:  5'- cGACAGaauugcCGAGCGCGuaGAGCGCA-CGa -3'
miRNA:   3'- -CUGUU------GCUCGCGCuaCUCGUGUaGCg -5'
24302 5' -52.3 NC_005263.2 + 10287 0.68 0.722684
Target:  5'- cGGCGACauGAGCGCcgGAUGcGCGCccGUCGUc -3'
miRNA:   3'- -CUGUUG--CUCGCG--CUACuCGUG--UAGCG- -5'
24302 5' -52.3 NC_005263.2 + 7513 0.68 0.711657
Target:  5'- uGACGGCGAgGUGCGuacaGGGCGgAUgGCa -3'
miRNA:   3'- -CUGUUGCU-CGCGCua--CUCGUgUAgCG- -5'
24302 5' -52.3 NC_005263.2 + 11888 0.68 0.700547
Target:  5'- uGACGACGcGGCGCc--GGGCGCcugCGCg -3'
miRNA:   3'- -CUGUUGC-UCGCGcuaCUCGUGua-GCG- -5'
24302 5' -52.3 NC_005263.2 + 7027 0.68 0.700547
Target:  5'- uGCAuguCGcGCGCcgacgGAUG-GCGCAUCGCg -3'
miRNA:   3'- cUGUu--GCuCGCG-----CUACuCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 35466 0.69 0.678128
Target:  5'- uGACAGCGGGCGCcGAaaccGA-CGuCGUCGCa -3'
miRNA:   3'- -CUGUUGCUCGCG-CUa---CUcGU-GUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 29283 0.69 0.665711
Target:  5'- cGGCAAUGAGCugcacgGCGGccgGGucggcauGCGCAUCGCg -3'
miRNA:   3'- -CUGUUGCUCG------CGCUa--CU-------CGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 45167 0.69 0.644178
Target:  5'- -uCGGCG-GCgGCGAUG-GCGCAUuCGCg -3'
miRNA:   3'- cuGUUGCuCG-CGCUACuCGUGUA-GCG- -5'
24302 5' -52.3 NC_005263.2 + 2092 0.69 0.640772
Target:  5'- cGGCAGCGAGUuguagGCGAgcaucgccucgaacUcGGCACGUUGCa -3'
miRNA:   3'- -CUGUUGCUCG-----CGCU--------------AcUCGUGUAGCG- -5'
24302 5' -52.3 NC_005263.2 + 39098 0.69 0.632823
Target:  5'- gGACGGCGAguacGCGCGAcucGuGCGCcgUGCg -3'
miRNA:   3'- -CUGUUGCU----CGCGCUa--CuCGUGuaGCG- -5'
24302 5' -52.3 NC_005263.2 + 33677 0.69 0.632823
Target:  5'- ---uGCGGGCGCGAaucuUG-GCGCAgCGCg -3'
miRNA:   3'- cuguUGCUCGCGCU----ACuCGUGUaGCG- -5'
24302 5' -52.3 NC_005263.2 + 37084 0.7 0.618062
Target:  5'- gGACAGC-AGCGCGAUc-GCACAcaugacggaggguuUCGCa -3'
miRNA:   3'- -CUGUUGcUCGCGCUAcuCGUGU--------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.