miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24303 3' -57 NC_005263.2 + 31985 0.66 0.586239
Target:  5'- cGCAaccugcccggacUGUGGCgGGAgUGGCACUgugGGCGGc -3'
miRNA:   3'- uCGU------------ACAUCGgCCU-GUCGUGG---UCGCC- -5'
24303 3' -57 NC_005263.2 + 20708 0.66 0.586239
Target:  5'- cGCcgGUcgugacgcAGCCGGuCAGCgcGCCGGCc- -3'
miRNA:   3'- uCGuaCA--------UCGGCCuGUCG--UGGUCGcc -5'
24303 3' -57 NC_005263.2 + 27456 0.66 0.586239
Target:  5'- gAGCccgAUGUcaccuucuGCCGGAUcgAGCACaaCGGCGGa -3'
miRNA:   3'- -UCG---UACAu-------CGGCCUG--UCGUG--GUCGCC- -5'
24303 3' -57 NC_005263.2 + 30285 0.66 0.586239
Target:  5'- cGCGaacGUGuCCGcGACAGCGCCGggcGCGGc -3'
miRNA:   3'- uCGUa--CAUcGGC-CUGUCGUGGU---CGCC- -5'
24303 3' -57 NC_005263.2 + 15563 0.66 0.585143
Target:  5'- aAGCGcGUGGCCGGccugccgACAGuCGCC-GCGu -3'
miRNA:   3'- -UCGUaCAUCGGCC-------UGUC-GUGGuCGCc -5'
24303 3' -57 NC_005263.2 + 27756 0.66 0.575298
Target:  5'- aAGCuGUGgaucaGGCCGGuauCGGUGCCgacAGCGGu -3'
miRNA:   3'- -UCG-UACa----UCGGCCu--GUCGUGG---UCGCC- -5'
24303 3' -57 NC_005263.2 + 10392 0.66 0.564404
Target:  5'- cGCcgGgccGGCCGGcgaGCGGguCCGGCGc -3'
miRNA:   3'- uCGuaCa--UCGGCC---UGUCguGGUCGCc -5'
24303 3' -57 NC_005263.2 + 15486 0.66 0.564404
Target:  5'- uGCGgc-GGCgCGGugAGCAUCAGCa- -3'
miRNA:   3'- uCGUacaUCG-GCCugUCGUGGUCGcc -5'
24303 3' -57 NC_005263.2 + 12549 0.66 0.564404
Target:  5'- cGCGgc-GGCCGG-CGGCGCCguAGCGc -3'
miRNA:   3'- uCGUacaUCGGCCuGUCGUGG--UCGCc -5'
24303 3' -57 NC_005263.2 + 16386 0.66 0.564404
Target:  5'- cGGCcugAUGaAGCUGGcCGGCAUC-GCGGg -3'
miRNA:   3'- -UCG---UACaUCGGCCuGUCGUGGuCGCC- -5'
24303 3' -57 NC_005263.2 + 27893 0.66 0.564404
Target:  5'- cGGCGcGcAGUCGGGCaaAGCACUcgacGGCGGc -3'
miRNA:   3'- -UCGUaCaUCGGCCUG--UCGUGG----UCGCC- -5'
24303 3' -57 NC_005263.2 + 47313 0.66 0.561147
Target:  5'- cGCcgGcGGCCGGcACgcucaaggucgaagGGCugCAGUGGa -3'
miRNA:   3'- uCGuaCaUCGGCC-UG--------------UCGugGUCGCC- -5'
24303 3' -57 NC_005263.2 + 10757 0.66 0.553566
Target:  5'- cGCAUGcGGCCGu-CGGCAUCAaagcugcgcGCGGu -3'
miRNA:   3'- uCGUACaUCGGCcuGUCGUGGU---------CGCC- -5'
24303 3' -57 NC_005263.2 + 18131 0.66 0.553566
Target:  5'- uGGCAcUGgcGCUGGuaaucauccucACAGCuAUCGGCGGc -3'
miRNA:   3'- -UCGU-ACauCGGCC-----------UGUCG-UGGUCGCC- -5'
24303 3' -57 NC_005263.2 + 39115 0.66 0.550326
Target:  5'- gGGaCGUgGUGGCCGGccagaucaacgucgGCGGCACCGuGuCGGc -3'
miRNA:   3'- -UC-GUA-CAUCGGCC--------------UGUCGUGGU-C-GCC- -5'
24303 3' -57 NC_005263.2 + 26617 0.67 0.532084
Target:  5'- gAGCGguaaucgacgGUGcGCCGGAUuugccaguGGCGCCgcAGCGGu -3'
miRNA:   3'- -UCGUa---------CAU-CGGCCUG--------UCGUGG--UCGCC- -5'
24303 3' -57 NC_005263.2 + 20405 0.67 0.532084
Target:  5'- aAGCcuAUGcGGCCGc-CGGCGCCGGCGc -3'
miRNA:   3'- -UCG--UACaUCGGCcuGUCGUGGUCGCc -5'
24303 3' -57 NC_005263.2 + 29218 0.67 0.521456
Target:  5'- cGGCGcGUAuuuGCCGu-CGGCGCgCAGCGGc -3'
miRNA:   3'- -UCGUaCAU---CGGCcuGUCGUG-GUCGCC- -5'
24303 3' -57 NC_005263.2 + 24813 0.67 0.520397
Target:  5'- cGGCGcGUauucggccuauacGGCCGG-CGGCAaCGGCGGu -3'
miRNA:   3'- -UCGUaCA-------------UCGGCCuGUCGUgGUCGCC- -5'
24303 3' -57 NC_005263.2 + 47915 0.67 0.51091
Target:  5'- aAGC----GGCCGGGC-GCACgggCAGCGGg -3'
miRNA:   3'- -UCGuacaUCGGCCUGuCGUG---GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.