miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24303 5' -59.3 NC_005263.2 + 27931 0.66 0.496017
Target:  5'- cGCCCGGc-GCGCUcucgucgaugaGCCGgACGgCGCGg -3'
miRNA:   3'- -UGGGCCuuCGCGAa----------CGGC-UGCaGCGC- -5'
24303 5' -59.3 NC_005263.2 + 32660 0.66 0.496017
Target:  5'- uUCCGGAuGGCGCggGUCGGCG--GCGa -3'
miRNA:   3'- uGGGCCU-UCGCGaaCGGCUGCagCGC- -5'
24303 5' -59.3 NC_005263.2 + 25691 0.66 0.496017
Target:  5'- cCCCGGAcacGGCGa--GCaCGGCGgCGCGu -3'
miRNA:   3'- uGGGCCU---UCGCgaaCG-GCUGCaGCGC- -5'
24303 5' -59.3 NC_005263.2 + 35447 0.66 0.485955
Target:  5'- cCCCGGc-GCGCcgGCCGACGacgauaUCGaCGg -3'
miRNA:   3'- uGGGCCuuCGCGaaCGGCUGC------AGC-GC- -5'
24303 5' -59.3 NC_005263.2 + 29758 0.66 0.479964
Target:  5'- uGCgCCGGGuucugcggguucagcAGCGUgccGUCGGCGUCGUa -3'
miRNA:   3'- -UG-GGCCU---------------UCGCGaa-CGGCUGCAGCGc -5'
24303 5' -59.3 NC_005263.2 + 14241 0.66 0.475991
Target:  5'- gACCCGuGgcGUGCggGCUGGC-UUGCGg -3'
miRNA:   3'- -UGGGC-CuuCGCGaaCGGCUGcAGCGC- -5'
24303 5' -59.3 NC_005263.2 + 5197 0.66 0.475991
Target:  5'- cGCCUGcAGGCGCggcGUCGcuacCGUCGCGa -3'
miRNA:   3'- -UGGGCcUUCGCGaa-CGGCu---GCAGCGC- -5'
24303 5' -59.3 NC_005263.2 + 3660 0.66 0.475991
Target:  5'- -gCCGGuguGCaGCUcguucgagacagUGCCGGcCGUCGCGu -3'
miRNA:   3'- ugGGCCuu-CG-CGA------------ACGGCU-GCAGCGC- -5'
24303 5' -59.3 NC_005263.2 + 33998 0.66 0.475991
Target:  5'- -gCCGGccGUGUUgGCUG-CGUCGCGg -3'
miRNA:   3'- ugGGCCuuCGCGAaCGGCuGCAGCGC- -5'
24303 5' -59.3 NC_005263.2 + 38445 0.66 0.473021
Target:  5'- gGCCaCGGucaagacggcgaucGAGaCGCUUGCCG-CGUCGa- -3'
miRNA:   3'- -UGG-GCC--------------UUC-GCGAACGGCuGCAGCgc -5'
24303 5' -59.3 NC_005263.2 + 25921 0.66 0.466129
Target:  5'- --aCGGucGCGU-UGCCGGuCGUCGCa -3'
miRNA:   3'- uggGCCuuCGCGaACGGCU-GCAGCGc -5'
24303 5' -59.3 NC_005263.2 + 45532 0.66 0.466129
Target:  5'- uGCCUGGAcGGcCGUgaUUGCCGAuCGucUCGCGu -3'
miRNA:   3'- -UGGGCCU-UC-GCG--AACGGCU-GC--AGCGC- -5'
24303 5' -59.3 NC_005263.2 + 31024 0.66 0.465149
Target:  5'- cGCCCGGGcaccagaucaagcAGUcgGCcgUGCCGAacaGUCGCc -3'
miRNA:   3'- -UGGGCCU-------------UCG--CGa-ACGGCUg--CAGCGc -5'
24303 5' -59.3 NC_005263.2 + 27036 0.66 0.456374
Target:  5'- gACCUGGccGC-CUUGUgGAuCGUCGUGg -3'
miRNA:   3'- -UGGGCCuuCGcGAACGgCU-GCAGCGC- -5'
24303 5' -59.3 NC_005263.2 + 21453 0.66 0.456374
Target:  5'- aAUCCGGAAGCGCcaccGCUG-CGgCGCc -3'
miRNA:   3'- -UGGGCCUUCGCGaa--CGGCuGCaGCGc -5'
24303 5' -59.3 NC_005263.2 + 46237 0.66 0.456374
Target:  5'- aAUCCGGGccaGGCGCgccagaaCCGcACGUCGCc -3'
miRNA:   3'- -UGGGCCU---UCGCGaac----GGC-UGCAGCGc -5'
24303 5' -59.3 NC_005263.2 + 1885 0.66 0.450574
Target:  5'- gGCCCGGAuuGGCGgggUUGCCGAucaggaaguaccagcCG-CGCGu -3'
miRNA:   3'- -UGGGCCU--UCGCg--AACGGCU---------------GCaGCGC- -5'
24303 5' -59.3 NC_005263.2 + 20724 0.67 0.437201
Target:  5'- -gCCGGucAGCGCgccgGCCGcCGcCGCGc -3'
miRNA:   3'- ugGGCCu-UCGCGaa--CGGCuGCaGCGC- -5'
24303 5' -59.3 NC_005263.2 + 37948 0.67 0.437201
Target:  5'- -gCCGGu-GCGCaaccgGCCGAUGcCGCGc -3'
miRNA:   3'- ugGGCCuuCGCGaa---CGGCUGCaGCGC- -5'
24303 5' -59.3 NC_005263.2 + 16376 0.67 0.437201
Target:  5'- cGCUCGGcGGCggccugaugaaGCUgGCCGGCaUCGCGg -3'
miRNA:   3'- -UGGGCCuUCG-----------CGAaCGGCUGcAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.