Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 33587 | 1.07 | 0.001708 |
Target: 5'- gCAUCCGAAAGACCCACAAGACGCCCUu -3' miRNA: 3'- -GUAGGCUUUCUGGGUGUUCUGCGGGA- -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 42803 | 0.75 | 0.288943 |
Target: 5'- ---gCGAAAGACCCgaacgccgaguaaGCGAGACGCCUg -3' miRNA: 3'- guagGCUUUCUGGG-------------UGUUCUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 44712 | 0.74 | 0.327957 |
Target: 5'- --aCCGAAGuGCCCGCAAcgacggcGACGCCCg -3' miRNA: 3'- guaGGCUUUcUGGGUGUU-------CUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 16864 | 0.72 | 0.418131 |
Target: 5'- aCGUCCGAgGAGAaCCGCcAGGCGCUCg -3' miRNA: 3'- -GUAGGCU-UUCUgGGUGuUCUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 36537 | 0.72 | 0.437698 |
Target: 5'- --cCUGAAAGGCCUGCAAGACaaGCUCg -3' miRNA: 3'- guaGGCUUUCUGGGUGUUCUG--CGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 4723 | 0.69 | 0.564572 |
Target: 5'- uCGUCCGGGuacgucgcGCCCGCGAGcACGCCa- -3' miRNA: 3'- -GUAGGCUUuc------UGGGUGUUC-UGCGGga -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 21063 | 0.69 | 0.609288 |
Target: 5'- aUAUCCacGAcGAUCCACAAGGCGgCCa -3' miRNA: 3'- -GUAGGcuUU-CUGGGUGUUCUGCgGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 44987 | 0.68 | 0.620543 |
Target: 5'- uGUCCGGgaucGAGGCgCGCAuGGCGCCg- -3' miRNA: 3'- gUAGGCU----UUCUGgGUGUuCUGCGGga -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 43436 | 0.68 | 0.631808 |
Target: 5'- gAUCCugacGAAAGACCCGCGcgccGGCcuGCCCg -3' miRNA: 3'- gUAGG----CUUUCUGGGUGUu---CUG--CGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 44484 | 0.68 | 0.654328 |
Target: 5'- --gUCGAuugcuacGGCCCGC-AGGCGCCCg -3' miRNA: 3'- guaGGCUuu-----CUGGGUGuUCUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 5716 | 0.68 | 0.665562 |
Target: 5'- aAUUCGGGgcGGACCUugAAGgguACGCCCc -3' miRNA: 3'- gUAGGCUU--UCUGGGugUUC---UGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 21865 | 0.67 | 0.69902 |
Target: 5'- gCGUUCGcGAcGGCCgGCAAGACGCUa- -3' miRNA: 3'- -GUAGGCuUU-CUGGgUGUUCUGCGGga -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 30489 | 0.67 | 0.69902 |
Target: 5'- --aUCGAugcgcGACCCGCGccacuggaAGAUGCCCUg -3' miRNA: 3'- guaGGCUuu---CUGGGUGU--------UCUGCGGGA- -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 29018 | 0.67 | 0.710052 |
Target: 5'- aCAUCgGccAGcCCUGCAAGACGCaCCa -3' miRNA: 3'- -GUAGgCuuUCuGGGUGUUCUGCG-GGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 38296 | 0.67 | 0.718821 |
Target: 5'- aAUCCGcacGAAGGCUaugccgcacgcgGCGAGGCGCCCc -3' miRNA: 3'- gUAGGC---UUUCUGGg-----------UGUUCUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 4153 | 0.66 | 0.731864 |
Target: 5'- uGUCCGAcuu-CCCACAAGucCGCCg- -3' miRNA: 3'- gUAGGCUuucuGGGUGUUCu-GCGGga -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 34877 | 0.66 | 0.731864 |
Target: 5'- gCAUCuUGAuGGACCuCGCGcAGGCGCUCa -3' miRNA: 3'- -GUAG-GCUuUCUGG-GUGU-UCUGCGGGa -5' |
|||||||
24304 | 3' | -53.6 | NC_005263.2 | + | 2019 | 0.66 | 0.753257 |
Target: 5'- aAUCCGcAgcGGCgCAUAAcGGCGCCCg -3' miRNA: 3'- gUAGGC-UuuCUGgGUGUU-CUGCGGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home