miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 3' -58.6 NC_005263.2 + 24543 0.66 0.495048
Target:  5'- -cGGCGgCGG-CGCGGgCGGcGGCGGCu -3'
miRNA:   3'- caCUGCgGCCgGUGCCaGUU-CUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 12296 0.66 0.495048
Target:  5'- -cGAC-CCGGCC-UGGaCAGGuuuCGGCa -3'
miRNA:   3'- caCUGcGGCCGGuGCCaGUUCu--GCCG- -5'
24310 3' -58.6 NC_005263.2 + 32899 0.66 0.495048
Target:  5'- cGUGGCGUCGGCguCGG-CGGcccgcuGAcCGGCu -3'
miRNA:   3'- -CACUGCGGCCGguGCCaGUU------CU-GCCG- -5'
24310 3' -58.6 NC_005263.2 + 24099 0.66 0.495048
Target:  5'- -cGGCGgCGGCUACGuGcCGGGcuaucaguACGGCa -3'
miRNA:   3'- caCUGCgGCCGGUGC-CaGUUC--------UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 42008 0.66 0.495048
Target:  5'- -aGACGagCGGCCACGuGcgCAAGACGu- -3'
miRNA:   3'- caCUGCg-GCCGGUGC-Ca-GUUCUGCcg -5'
24310 3' -58.6 NC_005263.2 + 35737 0.66 0.495048
Target:  5'- -aGACGCCGGaagaagcggCGCGGcgCGAGAC-GCu -3'
miRNA:   3'- caCUGCGGCCg--------GUGCCa-GUUCUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 10084 0.67 0.474958
Target:  5'- -cGACGCgGGCaGCGcGUCGAGAauGUu -3'
miRNA:   3'- caCUGCGgCCGgUGC-CAGUUCUgcCG- -5'
24310 3' -58.6 NC_005263.2 + 34567 0.67 0.474958
Target:  5'- uUGGCGCa-GCCACGGUCA--GCGucGCu -3'
miRNA:   3'- cACUGCGgcCGGUGCCAGUucUGC--CG- -5'
24310 3' -58.6 NC_005263.2 + 10850 0.67 0.474958
Target:  5'- uUGGUGCgGGCUACGG-CGucGCGGCg -3'
miRNA:   3'- cACUGCGgCCGGUGCCaGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 24949 0.67 0.465067
Target:  5'- -gGACGgCGGUgCGCGGUUcgcAGAuCGGCa -3'
miRNA:   3'- caCUGCgGCCG-GUGCCAGu--UCU-GCCG- -5'
24310 3' -58.6 NC_005263.2 + 20877 0.67 0.465067
Target:  5'- -cGGCGCUGcGCCAgUGG-CAGGA-GGCg -3'
miRNA:   3'- caCUGCGGC-CGGU-GCCaGUUCUgCCG- -5'
24310 3' -58.6 NC_005263.2 + 564 0.67 0.465067
Target:  5'- -gGGCGCgcaGGCCuuGGaaugCGAGAuCGGCa -3'
miRNA:   3'- caCUGCGg--CCGGugCCa---GUUCU-GCCG- -5'
24310 3' -58.6 NC_005263.2 + 23300 0.67 0.445612
Target:  5'- -aGGCGCCGuuuuaCgGCGGcCAggcGGGCGGCa -3'
miRNA:   3'- caCUGCGGCc----GgUGCCaGU---UCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 9620 0.67 0.445612
Target:  5'- --cGCGUCGcGCCACGGaucgacaaaguUCGAcGCGGCa -3'
miRNA:   3'- cacUGCGGC-CGGUGCC-----------AGUUcUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 3615 0.67 0.445612
Target:  5'- -gGAUGCC-GCCGuCGGUCAGGuaGGCc -3'
miRNA:   3'- caCUGCGGcCGGU-GCCAGUUCugCCG- -5'
24310 3' -58.6 NC_005263.2 + 6790 0.67 0.444652
Target:  5'- gGUGACGCCGGCgGgCGGcgUCAAuugcacuugcaguGACuGCa -3'
miRNA:   3'- -CACUGCGGCCGgU-GCC--AGUU-------------CUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 27517 0.67 0.436057
Target:  5'- -cGAaGCCGGUCGCGGUgccCGucGGcACGGCc -3'
miRNA:   3'- caCUgCGGCCGGUGCCA---GU--UC-UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 35453 0.67 0.436057
Target:  5'- --cGCGCCGGCCgACGa-CGAuaucGACGGCg -3'
miRNA:   3'- cacUGCGGCCGG-UGCcaGUU----CUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 17620 0.67 0.433214
Target:  5'- aGUGGCGCgGGUCGCGcaucgaugcguuccGUCGGcgcuACGGCa -3'
miRNA:   3'- -CACUGCGgCCGGUGC--------------CAGUUc---UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 3908 0.67 0.426621
Target:  5'- cGUGguaGCGCCGG--GCGG-CAAuGGCGGCa -3'
miRNA:   3'- -CAC---UGCGGCCggUGCCaGUU-CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.