miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 5' -52.2 NC_005263.2 + 31160 0.66 0.850028
Target:  5'- cUUGCCGUGUCGGcGCagaucGUCGuUCCa -3'
miRNA:   3'- -AACGGCGCAGCU-UGaaa--CAGCuAGGc -5'
24310 5' -52.2 NC_005263.2 + 7330 0.66 0.839298
Target:  5'- -cGCCGUGUcCGAACUgccacggcuggaUGacUUGAUCCGg -3'
miRNA:   3'- aaCGGCGCA-GCUUGAa-----------AC--AGCUAGGC- -5'
24310 5' -52.2 NC_005263.2 + 30966 0.66 0.835646
Target:  5'- gUGCCGaCGUCGAcgaccaugaagccguACUUguaGUCGA-CCa -3'
miRNA:   3'- aACGGC-GCAGCU---------------UGAAa--CAGCUaGGc -5'
24310 5' -52.2 NC_005263.2 + 11709 0.66 0.822581
Target:  5'- -cGCUGCGagggcgucaugUCGAGCUUgaUGUCGAagcCCGc -3'
miRNA:   3'- aaCGGCGC-----------AGCUUGAA--ACAGCUa--GGC- -5'
24310 5' -52.2 NC_005263.2 + 20204 0.66 0.81299
Target:  5'- -cGCCGcCGUCGAguGCUUUGcccgacugCGcgCCGc -3'
miRNA:   3'- aaCGGC-GCAGCU--UGAAACa-------GCuaGGC- -5'
24310 5' -52.2 NC_005263.2 + 34010 0.67 0.803197
Target:  5'- -gGCUGCGUCGcGGCgcg--CGAUCCa -3'
miRNA:   3'- aaCGGCGCAGC-UUGaaacaGCUAGGc -5'
24310 5' -52.2 NC_005263.2 + 19104 0.67 0.793213
Target:  5'- -gGCCGaUGUCGAAUUgcucgCGAUCUGg -3'
miRNA:   3'- aaCGGC-GCAGCUUGAaaca-GCUAGGC- -5'
24310 5' -52.2 NC_005263.2 + 35281 0.67 0.772718
Target:  5'- -cGCUGCG-CGAACUgga-CGAUCUGg -3'
miRNA:   3'- aaCGGCGCaGCUUGAaacaGCUAGGC- -5'
24310 5' -52.2 NC_005263.2 + 26215 0.68 0.718988
Target:  5'- cUUGCgGCGUCGucAACUcgGUCGAUagcgucuugCCGg -3'
miRNA:   3'- -AACGgCGCAGC--UUGAaaCAGCUA---------GGC- -5'
24310 5' -52.2 NC_005263.2 + 3487 0.68 0.707916
Target:  5'- cUGCCGCagcgaGUCGGGCaagUUGUCGcgCgCGg -3'
miRNA:   3'- aACGGCG-----CAGCUUGa--AACAGCuaG-GC- -5'
24310 5' -52.2 NC_005263.2 + 25529 0.69 0.684421
Target:  5'- -aGCCGCacccgcaGUCGAGCUUcgaGUUGAUCgCGa -3'
miRNA:   3'- aaCGGCG-------CAGCUUGAAa--CAGCUAG-GC- -5'
24310 5' -52.2 NC_005263.2 + 5123 0.71 0.549915
Target:  5'- -aG-CGCGUCGAGCUUguugCGAUCCu -3'
miRNA:   3'- aaCgGCGCAGCUUGAAaca-GCUAGGc -5'
24310 5' -52.2 NC_005263.2 + 36117 0.71 0.549915
Target:  5'- -gGCCGCGUCGuACUUgcgcUCGAUCg- -3'
miRNA:   3'- aaCGGCGCAGCuUGAAac--AGCUAGgc -5'
24310 5' -52.2 NC_005263.2 + 35889 0.71 0.549915
Target:  5'- -cGCCGCGUUGA----UGUCGGUgCGg -3'
miRNA:   3'- aaCGGCGCAGCUugaaACAGCUAgGC- -5'
24310 5' -52.2 NC_005263.2 + 32771 0.74 0.394727
Target:  5'- -cGCCGCGUCGGGgUUcucggUGUCGGcCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUgAA-----ACAGCUaGGC- -5'
24310 5' -52.2 NC_005263.2 + 14053 0.75 0.341024
Target:  5'- -cGCCGCGUCGAGCgcaUUGagCGcgCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUGa--AACa-GCuaGGC- -5'
24310 5' -52.2 NC_005263.2 + 38473 1.06 0.002698
Target:  5'- cUUGCCGCGUCGAACUUUGUCGAUCCGu -3'
miRNA:   3'- -AACGGCGCAGCUUGAAACAGCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.