miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 35421 0.74 0.592218
Target:  5'- gCCGGCAAGCucGAcGCGAACgACGACc -3'
miRNA:   3'- -GGUUGUUCGuaCUcUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 34777 0.67 0.938253
Target:  5'- gCCGGCAucAGCAUGAcGC-AGCuCGCGAUg -3'
miRNA:   3'- -GGUUGU--UCGUACUcUGcUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 33965 0.77 0.428514
Target:  5'- gCCGGCGAGUGUGcGGCGAAUCguaGCGGCg -3'
miRNA:   3'- -GGUUGUUCGUACuCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 32697 0.68 0.89292
Target:  5'- gUCAGCAGGUcgGucACGAGCgcaugCACGGCg -3'
miRNA:   3'- -GGUUGUUCGuaCucUGCUUG-----GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 30902 0.67 0.938253
Target:  5'- gCAGCGuGCAcGAGuCGAgcGCgGCGACg -3'
miRNA:   3'- gGUUGUuCGUaCUCuGCU--UGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 29630 0.66 0.961581
Target:  5'- aCGguACGAGCAUGAugccGGCGAGgUugaACGACa -3'
miRNA:   3'- gGU--UGUUCGUACU----CUGCUUgG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 29008 0.7 0.794126
Target:  5'- gCCGACcGGCAgugcGuuGCGcACCGCGACg -3'
miRNA:   3'- -GGUUGuUCGUa---CucUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 28044 0.66 0.957499
Target:  5'- uUCGGCucGAGCGUGugcuGaACGAccGCCGCGAUc -3'
miRNA:   3'- -GGUUG--UUCGUACu---C-UGCU--UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 27546 0.75 0.524167
Target:  5'- gCCGGCAGGCcgGGcACGAGCguCGCGGCg -3'
miRNA:   3'- -GGUUGUUCGuaCUcUGCUUG--GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 27278 0.7 0.823945
Target:  5'- cCCGACu-GCGcGAGGcCGAGCCGCGcCu -3'
miRNA:   3'- -GGUUGuuCGUaCUCU-GCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 26703 0.69 0.869047
Target:  5'- gCCcGCAAGCA--GGACGAGCUccgugugcauGCGAUg -3'
miRNA:   3'- -GGuUGUUCGUacUCUGCUUGG----------UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 26523 0.66 0.961581
Target:  5'- gCGGCGucgacGCcgGcGGCGAGCaCGCGGCg -3'
miRNA:   3'- gGUUGUu----CGuaCuCUGCUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 25890 0.68 0.89292
Target:  5'- gCCGAC--GCcgGcGACG-GCCGCGACg -3'
miRNA:   3'- -GGUUGuuCGuaCuCUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 25047 0.67 0.943512
Target:  5'- gCGGCAGGCAacacGACGAuCC-CGACg -3'
miRNA:   3'- gGUUGUUCGUacu-CUGCUuGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23886 0.72 0.718615
Target:  5'- aCGACAAGCGUGAGcgcgcucgugaGCGcgcCCGCGAg -3'
miRNA:   3'- gGUUGUUCGUACUC-----------UGCuu-GGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 23325 0.66 0.956219
Target:  5'- cCCGGCGAGCcgccgacgccgcccGUGAG-CGAcaguagcagGCC-CGACa -3'
miRNA:   3'- -GGUUGUUCG--------------UACUCuGCU---------UGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 22590 0.73 0.650015
Target:  5'- gCCaAGCcAGCccGAGACGccGACCAUGACg -3'
miRNA:   3'- -GG-UUGuUCGuaCUCUGC--UUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 22093 0.66 0.961581
Target:  5'- cUCGACAAGcCAUucGGCGAaguGCCGCG-Cg -3'
miRNA:   3'- -GGUUGUUC-GUAcuCUGCU---UGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 22092 0.68 0.914168
Target:  5'- aCCGGCAcaccaGGCGUGAcGGCu-GCCGcCGGCa -3'
miRNA:   3'- -GGUUGU-----UCGUACU-CUGcuUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 21090 0.7 0.833455
Target:  5'- aCGACAcaaGGUGUGGgcggcGACGAGCC-CGGCg -3'
miRNA:   3'- gGUUGU---UCGUACU-----CUGCUUGGuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.