miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 228 0.68 0.914168
Target:  5'- -aGAUAuGCGUGGGAuCGccCCACGGCg -3'
miRNA:   3'- ggUUGUuCGUACUCU-GCuuGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 38776 0.68 0.914168
Target:  5'- aCGAUccGCAUGAcGAUGGaagcgGCCACGAg -3'
miRNA:   3'- gGUUGuuCGUACU-CUGCU-----UGGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 22092 0.68 0.914168
Target:  5'- aCCGGCAcaccaGGCGUGAcGGCu-GCCGcCGGCa -3'
miRNA:   3'- -GGUUGU-----UCGUACU-CUGcuUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 37841 0.68 0.914168
Target:  5'- gCCGACGcGGCGUuucGCGAACCGCGuGCg -3'
miRNA:   3'- -GGUUGU-UCGUAcucUGCUUGGUGC-UG- -5'
24312 3' -48.9 NC_005263.2 + 37921 0.68 0.900301
Target:  5'- aCAGCGGGCGc-AGGCGcGCCGcCGGCa -3'
miRNA:   3'- gGUUGUUCGUacUCUGCuUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 39881 0.68 0.89292
Target:  5'- uCCAGgAAGUGUucaAGACGAACCccAUGACg -3'
miRNA:   3'- -GGUUgUUCGUAc--UCUGCUUGG--UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 9454 0.68 0.89292
Target:  5'- -uGGCGAGguUGGcGuCGAugCGCGACg -3'
miRNA:   3'- ggUUGUUCguACU-CuGCUugGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 32697 0.68 0.89292
Target:  5'- gUCAGCAGGUcgGucACGAGCgcaugCACGGCg -3'
miRNA:   3'- -GGUUGUUCGuaCucUGCUUG-----GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 25890 0.68 0.89292
Target:  5'- gCCGAC--GCcgGcGACG-GCCGCGACg -3'
miRNA:   3'- -GGUUGuuCGuaCuCUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 44886 0.68 0.89292
Target:  5'- cCCGGCGu-CAUcGGGGCGGGCgGCGGCc -3'
miRNA:   3'- -GGUUGUucGUA-CUCUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 3083 0.68 0.89292
Target:  5'- gCuuCGAGCuucGGGacaucauucGCGAGCCACGGCg -3'
miRNA:   3'- gGuuGUUCGua-CUC---------UGCUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 47939 0.68 0.885247
Target:  5'- gCGAgAAGCGUGGGAgGGGauugugagugaCACGACg -3'
miRNA:   3'- gGUUgUUCGUACUCUgCUUg----------GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 45184 0.69 0.877287
Target:  5'- gCAuucGCGAGCAUGGcGGCcAACUAUGGCg -3'
miRNA:   3'- gGU---UGUUCGUACU-CUGcUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 26703 0.69 0.869047
Target:  5'- gCCcGCAAGCA--GGACGAGCUccgugugcauGCGAUg -3'
miRNA:   3'- -GGuUGUUCGUacUCUGCUUGG----------UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 21090 0.7 0.833455
Target:  5'- aCGACAcaaGGUGUGGgcggcGACGAGCC-CGGCg -3'
miRNA:   3'- gGUUGU---UCGUACU-----CUGCUUGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 27278 0.7 0.823945
Target:  5'- cCCGACu-GCGcGAGGcCGAGCCGCGcCu -3'
miRNA:   3'- -GGUUGuuCGUaCUCU-GCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 29008 0.7 0.794126
Target:  5'- gCCGACcGGCAgugcGuuGCGcACCGCGACg -3'
miRNA:   3'- -GGUUGuUCGUa---CucUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 40017 0.71 0.773291
Target:  5'- uCCGAUcuGAGCA--AGACGAACCaauACGGCc -3'
miRNA:   3'- -GGUUG--UUCGUacUCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 7265 0.71 0.762625
Target:  5'- gUCAACGAuGUcgGUcGGGACGAGCgGCGGCa -3'
miRNA:   3'- -GGUUGUU-CG--UA-CUCUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23886 0.72 0.718615
Target:  5'- aCGACAAGCGUGAGcgcgcucgugaGCGcgcCCGCGAg -3'
miRNA:   3'- gGUUGUUCGUACUC-----------UGCuu-GGUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.