miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 5' -52.8 NC_005263.2 + 35887 0.66 0.825271
Target:  5'- --uUCGCCGCgUUgAUGUCgGUGcggUCGa -3'
miRNA:   3'- guuAGCGGCG-AAgUACGGgCACa--AGC- -5'
24312 5' -52.8 NC_005263.2 + 1166 0.66 0.805139
Target:  5'- cCGAUCGCCucggcuuGCUUCGggcucuUGCCCGc-UUCGa -3'
miRNA:   3'- -GUUAGCGG-------CGAAGU------ACGGGCacAAGC- -5'
24312 5' -52.8 NC_005263.2 + 38653 0.66 0.786194
Target:  5'- gGcgCGCCGCUgcccgUgGUGCCCGUcuuGaUCGg -3'
miRNA:   3'- gUuaGCGGCGA-----AgUACGGGCA---CaAGC- -5'
24312 5' -52.8 NC_005263.2 + 28435 0.67 0.765595
Target:  5'- -cAUCGCUgaGCUUCAccgGCCCGgcaUUCGa -3'
miRNA:   3'- guUAGCGG--CGAAGUa--CGGGCac-AAGC- -5'
24312 5' -52.8 NC_005263.2 + 9884 0.67 0.755072
Target:  5'- --cUCGgCGCuUUCAUGCUCGUcgUCGg -3'
miRNA:   3'- guuAGCgGCG-AAGUACGGGCAcaAGC- -5'
24312 5' -52.8 NC_005263.2 + 20659 0.67 0.733642
Target:  5'- ---gCGCCGCUcgUCGcgGCCgucgaaagCGUGUUCGg -3'
miRNA:   3'- guuaGCGGCGA--AGUa-CGG--------GCACAAGC- -5'
24312 5' -52.8 NC_005263.2 + 23775 0.67 0.722759
Target:  5'- gGcgCGCCGUUUUgcggaauugcgAUGCCCGUGccggCGg -3'
miRNA:   3'- gUuaGCGGCGAAG-----------UACGGGCACaa--GC- -5'
24312 5' -52.8 NC_005263.2 + 46779 0.68 0.68959
Target:  5'- ----gGCCGUgaUCGUGUUCGUGUUCa -3'
miRNA:   3'- guuagCGGCGa-AGUACGGGCACAAGc -5'
24312 5' -52.8 NC_005263.2 + 2282 0.69 0.644601
Target:  5'- --uUCGCCGUcggcaggUCGUGCgCCGUGgcCGg -3'
miRNA:   3'- guuAGCGGCGa------AGUACG-GGCACaaGC- -5'
24312 5' -52.8 NC_005263.2 + 20549 0.69 0.633295
Target:  5'- aCAAccUCGCCGCgacgcUCGUGCCCGg----- -3'
miRNA:   3'- -GUU--AGCGGCGa----AGUACGGGCacaagc -5'
24312 5' -52.8 NC_005263.2 + 2754 0.72 0.468804
Target:  5'- aGAUCGCgGCcgcCGUGCCgguCGUGUUCGu -3'
miRNA:   3'- gUUAGCGgCGaa-GUACGG---GCACAAGC- -5'
24312 5' -52.8 NC_005263.2 + 38992 1.08 0.001676
Target:  5'- gCAAUCGCCGCUUCAUGCCCGUGUUCGu -3'
miRNA:   3'- -GUUAGCGGCGAAGUACGGGCACAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.