miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 46531 0.67 0.5497
Target:  5'- aGCAUGgGUaucGACGGCAcgCuGUcgGCCGg -3'
miRNA:   3'- -UGUACgCG---CUGCCGUa-GcCAuaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 1934 0.67 0.538934
Target:  5'- cACGaGCGCGcCGGCAcCGGcgAcGCCGg -3'
miRNA:   3'- -UGUaCGCGCuGCCGUaGCCa-UaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 30930 0.67 0.538934
Target:  5'- gGCGUacGCGCGAgcugcgcauuCGGCuucUCGGccGUGCCGa -3'
miRNA:   3'- -UGUA--CGCGCU----------GCCGu--AGCCa-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 30451 0.67 0.538934
Target:  5'- aGCGUgaGCGCGGCGGCcuUCGcGUugcGCCa -3'
miRNA:   3'- -UGUA--CGCGCUGCCGu-AGC-CAua-CGGc -5'
24313 3' -56.1 NC_005263.2 + 3242 0.67 0.537861
Target:  5'- gACAgguagGCGCGAUcgccgcgcagacaGGCGUCGaGUAUcGCCu -3'
miRNA:   3'- -UGUa----CGCGCUG-------------CCGUAGC-CAUA-CGGc -5'
24313 3' -56.1 NC_005263.2 + 17334 0.68 0.52824
Target:  5'- cGCAUGCGCGAgGaaGUCGuGcGUGUCGa -3'
miRNA:   3'- -UGUACGCGCUgCcgUAGC-CaUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 45475 0.68 0.52824
Target:  5'- gGCAaGCGCGAUGaaccGCG-CGGUcgGCCu -3'
miRNA:   3'- -UGUaCGCGCUGC----CGUaGCCAuaCGGc -5'
24313 3' -56.1 NC_005263.2 + 4477 0.68 0.52824
Target:  5'- cCGUGCGCG-CGG-GUCGGcGUGCUu -3'
miRNA:   3'- uGUACGCGCuGCCgUAGCCaUACGGc -5'
24313 3' -56.1 NC_005263.2 + 28305 0.68 0.52824
Target:  5'- aAC-UGCGCGaucGCGGCGcgaaUCuGGUcgGCCGc -3'
miRNA:   3'- -UGuACGCGC---UGCCGU----AG-CCAuaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 29355 0.68 0.517626
Target:  5'- -gGUGCGCGAgcaGGCGcCGGUAacccggcGCCGa -3'
miRNA:   3'- ugUACGCGCUg--CCGUaGCCAUa------CGGC- -5'
24313 3' -56.1 NC_005263.2 + 33336 0.68 0.517626
Target:  5'- gGCGUGCGCGuCgGGCAgcuuugcgacuUCGGcauaGUGCUGa -3'
miRNA:   3'- -UGUACGCGCuG-CCGU-----------AGCCa---UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 41246 0.68 0.517626
Target:  5'- uCGUGCGCGAgGGCuaccugucgcCGGUcGUGUCGc -3'
miRNA:   3'- uGUACGCGCUgCCGua--------GCCA-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 42003 0.68 0.507098
Target:  5'- cACAUGaCGUGcCGGCAgugCGGccgGCCGc -3'
miRNA:   3'- -UGUAC-GCGCuGCCGUa--GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 9905 0.68 0.496662
Target:  5'- gUcgGCGCG-CGGCGUCGG---GCCu -3'
miRNA:   3'- uGuaCGCGCuGCCGUAGCCauaCGGc -5'
24313 3' -56.1 NC_005263.2 + 44065 0.68 0.486323
Target:  5'- -gGUGCuGCGGCGGCAgCGGg--GCUa -3'
miRNA:   3'- ugUACG-CGCUGCCGUaGCCauaCGGc -5'
24313 3' -56.1 NC_005263.2 + 11290 0.68 0.476089
Target:  5'- uCGUGCGCGACGaGCAgCGGcaauuUAUGgCCu -3'
miRNA:   3'- uGUACGCGCUGC-CGUaGCC-----AUAC-GGc -5'
24313 3' -56.1 NC_005263.2 + 26512 0.68 0.476089
Target:  5'- aACuguUGCGCG-CGGCGUCGac--GCCGg -3'
miRNA:   3'- -UGu--ACGCGCuGCCGUAGCcauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 35757 0.69 0.446051
Target:  5'- cGCggGCGCGguuacuGCGGCuggCGGcGUGCCa -3'
miRNA:   3'- -UGuaCGCGC------UGCCGua-GCCaUACGGc -5'
24313 3' -56.1 NC_005263.2 + 6864 0.69 0.436276
Target:  5'- aGCGgauUGCgGCGACGGCAUUguccaucgaGGgcuUGCCGg -3'
miRNA:   3'- -UGU---ACG-CGCUGCCGUAG---------CCau-ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 27966 0.69 0.426624
Target:  5'- cCcgGCGCGACGGCcguaccGUCGcgcuUGCCGu -3'
miRNA:   3'- uGuaCGCGCUGCCG------UAGCcau-ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.