miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 5' -54 NC_005263.2 + 39200 1.08 0.001171
Target:  5'- cGACGACAUCCUGCCGCCAGUAUUGCGc -3'
miRNA:   3'- -CUGCUGUAGGACGGCGGUCAUAACGC- -5'
24313 5' -54 NC_005263.2 + 12498 0.77 0.193195
Target:  5'- uGCGGCAUCCUGCgCGCCGGcuucgcGCGg -3'
miRNA:   3'- cUGCUGUAGGACG-GCGGUCauaa--CGC- -5'
24313 5' -54 NC_005263.2 + 26949 0.76 0.215472
Target:  5'- uGAUGACGUCgCUGCCGUCGGUcgUGa- -3'
miRNA:   3'- -CUGCUGUAG-GACGGCGGUCAuaACgc -5'
24313 5' -54 NC_005263.2 + 30357 0.73 0.35237
Target:  5'- cGCGGCcgCgCUGCCGCCGGcgccgagUGCGa -3'
miRNA:   3'- cUGCUGuaG-GACGGCGGUCaua----ACGC- -5'
24313 5' -54 NC_005263.2 + 44506 0.72 0.397329
Target:  5'- cGGCGGCAUCCUgGCCGUCAccgagGUcGCGa -3'
miRNA:   3'- -CUGCUGUAGGA-CGGCGGUca---UAaCGC- -5'
24313 5' -54 NC_005263.2 + 36319 0.71 0.416316
Target:  5'- cGCGACGUCCUG-CGCCA----UGCGa -3'
miRNA:   3'- cUGCUGUAGGACgGCGGUcauaACGC- -5'
24313 5' -54 NC_005263.2 + 30297 0.71 0.426016
Target:  5'- cGCGGCAUCCUcgGCCGCCuugccaUGCGc -3'
miRNA:   3'- cUGCUGUAGGA--CGGCGGucaua-ACGC- -5'
24313 5' -54 NC_005263.2 + 7286 0.71 0.435848
Target:  5'- aGCGACAUgacgcgugCCUGCgGCCAGgucUGCGc -3'
miRNA:   3'- cUGCUGUA--------GGACGgCGGUCauaACGC- -5'
24313 5' -54 NC_005263.2 + 39342 0.71 0.44581
Target:  5'- cGGCGuCAUCCUGCCGCgCAGcGUUa-- -3'
miRNA:   3'- -CUGCuGUAGGACGGCG-GUCaUAAcgc -5'
24313 5' -54 NC_005263.2 + 1081 0.7 0.49742
Target:  5'- aGCGACGUCCauuacgUGCCGCaGGUucauGUUGCa -3'
miRNA:   3'- cUGCUGUAGG------ACGGCGgUCA----UAACGc -5'
24313 5' -54 NC_005263.2 + 24463 0.7 0.517732
Target:  5'- cGACGACGUUCggguucgUGCCGCCGuucaUcgUGCGg -3'
miRNA:   3'- -CUGCUGUAGG-------ACGGCGGUc---AuaACGC- -5'
24313 5' -54 NC_005263.2 + 28984 0.69 0.529642
Target:  5'- gGGCG-CAUgCUGCUGCCAG-AUcGCGa -3'
miRNA:   3'- -CUGCuGUAgGACGGCGGUCaUAaCGC- -5'
24313 5' -54 NC_005263.2 + 9998 0.69 0.529642
Target:  5'- -uCGcCGUCUUGCgCGCCAGg--UGCGg -3'
miRNA:   3'- cuGCuGUAGGACG-GCGGUCauaACGC- -5'
24313 5' -54 NC_005263.2 + 41251 0.69 0.540555
Target:  5'- cGCGAgGgcuaCCUGUCGCCGGUcgUGUc -3'
miRNA:   3'- cUGCUgUa---GGACGGCGGUCAuaACGc -5'
24313 5' -54 NC_005263.2 + 14160 0.68 0.59608
Target:  5'- uGGCGACuucgggCCgGCgGCCGGUGUgcGCGa -3'
miRNA:   3'- -CUGCUGua----GGaCGgCGGUCAUAa-CGC- -5'
24313 5' -54 NC_005263.2 + 7349 0.68 0.618577
Target:  5'- aGCGACuugCC-GCCGCCGGUGacgaucGCGg -3'
miRNA:   3'- cUGCUGua-GGaCGGCGGUCAUaa----CGC- -5'
24313 5' -54 NC_005263.2 + 18925 0.68 0.626467
Target:  5'- uGACGACAUCCcGuucugaaccgacgcCCGCCAcGUGcgGCGu -3'
miRNA:   3'- -CUGCUGUAGGaC--------------GGCGGU-CAUaaCGC- -5'
24313 5' -54 NC_005263.2 + 11927 0.68 0.629849
Target:  5'- uGCGAUAUCCggcaGCCGgCCGGUAUcGaCGu -3'
miRNA:   3'- cUGCUGUAGGa---CGGC-GGUCAUAaC-GC- -5'
24313 5' -54 NC_005263.2 + 6444 0.67 0.641123
Target:  5'- -cCGACGaUCUGCCGCCAGagcacgaGCGa -3'
miRNA:   3'- cuGCUGUaGGACGGCGGUCauaa---CGC- -5'
24313 5' -54 NC_005263.2 + 36162 0.67 0.641123
Target:  5'- uGGCGACggCCUGCgCGaCCGGU---GCGa -3'
miRNA:   3'- -CUGCUGuaGGACG-GC-GGUCAuaaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.