Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 45937 | 0.72 | 0.671628 |
Target: 5'- uGGGCGCguCUCGCGccggaucagcgccAGGCGcUCGAAGUCa -3' miRNA: 3'- gCCUGCG--GAGCGU-------------UCUGU-AGUUUUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 4660 | 0.74 | 0.580015 |
Target: 5'- aCGGGCagGCCggcgCGCGGGucuuuCGUCAGGAUCg -3' miRNA: 3'- -GCCUG--CGGa---GCGUUCu----GUAGUUUUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 40082 | 1.12 | 0.002349 |
Target: 5'- gCGGACGCCUCGCAAGACAUCAAAAUCg -3' miRNA: 3'- -GCCUGCGGAGCGUUCUGUAGUUUUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 28270 | 0.68 | 0.877797 |
Target: 5'- --cGCGCUgcaGCGAGACGUCGuAGGUCa -3' miRNA: 3'- gccUGCGGag-CGUUCUGUAGU-UUUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 12147 | 0.69 | 0.824293 |
Target: 5'- gCGGucgaGCGCCUUGCAcGcaGCGUCAAcGAUCg -3' miRNA: 3'- -GCC----UGCGGAGCGUuC--UGUAGUU-UUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 11901 | 0.7 | 0.804542 |
Target: 5'- cCGGGCGCCUgCGCGcuGGCGUCc----- -3' miRNA: 3'- -GCCUGCGGA-GCGUu-CUGUAGuuuuag -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 35471 | 0.66 | 0.943549 |
Target: 5'- gCGGGCGCCgaaaccgacgucgUCGCAGuuaGCGUCGucgcGGUCa -3' miRNA: 3'- -GCCUGCGG-------------AGCGUUc--UGUAGUu---UUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 18511 | 0.67 | 0.907945 |
Target: 5'- --aACGCCUCGCGAucggcGGCGUCGAc--- -3' miRNA: 3'- gccUGCGGAGCGUU-----CUGUAGUUuuag -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 9796 | 0.68 | 0.877797 |
Target: 5'- gGGGCGCCUCGCcgcgugcGGCAUagccuUCg -3' miRNA: 3'- gCCUGCGGAGCGuu-----CUGUAguuuuAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 14048 | 0.7 | 0.794359 |
Target: 5'- aCGGGCGCCgCGuCGAGcGCAUUGAGcgCg -3' miRNA: 3'- -GCCUGCGGaGC-GUUC-UGUAGUUUuaG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 13220 | 0.72 | 0.695789 |
Target: 5'- aGGcgugaGCGCCUgCGCGAGGucCAUCAAGAUg -3' miRNA: 3'- gCC-----UGCGGA-GCGUUCU--GUAGUUUUAg -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 14225 | 0.66 | 0.944061 |
Target: 5'- aUGGuuACGCCUUGUucAGGAUAUCucguguGAUCa -3' miRNA: 3'- -GCC--UGCGGAGCG--UUCUGUAGuu----UUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 33161 | 0.7 | 0.773438 |
Target: 5'- gCGcGGCGCCUUGCAucgcgacggGGAUGUCGAGugguUCg -3' miRNA: 3'- -GC-CUGCGGAGCGU---------UCUGUAGUUUu---AG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 3619 | 0.67 | 0.907945 |
Target: 5'- uCGGGCGCCU-GCGGGcCGUagcAAUCg -3' miRNA: 3'- -GCCUGCGGAgCGUUCuGUAguuUUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 31260 | 0.72 | 0.66121 |
Target: 5'- uCGGACGUCUCGC---GCAUCGAcuGGUUg -3' miRNA: 3'- -GCCUGCGGAGCGuucUGUAGUU--UUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 3251 | 0.68 | 0.885773 |
Target: 5'- gCGcGAuCGCCgCGCAgacAGGCGUCGAGuAUCg -3' miRNA: 3'- -GC-CU-GCGGaGCGU---UCUGUAGUUU-UAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 11777 | 0.67 | 0.905144 |
Target: 5'- uCGGGCGgUgcauaucgcauggCGCAGGACGUCGcguGUCg -3' miRNA: 3'- -GCCUGCgGa------------GCGUUCUGUAGUuu-UAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 36206 | 0.67 | 0.907945 |
Target: 5'- aGGACGCCagcgCGCAGGcgcccggcgccGCGUCGucAGAUa -3' miRNA: 3'- gCCUGCGGa---GCGUUC-----------UGUAGU--UUUAg -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 19085 | 0.67 | 0.914733 |
Target: 5'- uGGuGCGUCUUGCAGGGCuggcCGAuGUCg -3' miRNA: 3'- gCC-UGCGGAGCGUUCUGua--GUUuUAG- -5' |
|||||||
24314 | 3' | -49.2 | NC_005263.2 | + | 10778 | 0.66 | 0.93881 |
Target: 5'- uGGaACGCaUCGCccucGACAUCGAcGUCg -3' miRNA: 3'- gCC-UGCGgAGCGuu--CUGUAGUUuUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home