miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24314 5' -50.4 NC_005263.2 + 18818 0.66 0.927502
Target:  5'- cGuguCCGCGAcuUGUCAagUGAcCCGUGCGu -3'
miRNA:   3'- uCuu-GGCGCU--AUAGU--GCUaGGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 36314 0.66 0.915053
Target:  5'- -cGACaCGCGAcGUCcUGcgCCAUGCGa -3'
miRNA:   3'- ucUUG-GCGCUaUAGuGCuaGGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 3094 0.66 0.915053
Target:  5'- cGGGACaucauuCGCGAgc-CACGGcgCCAUGCGc -3'
miRNA:   3'- -UCUUG------GCGCUauaGUGCUa-GGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 22664 0.66 0.908381
Target:  5'- ---uCCGCaAUAUCccguGCGGUUCGUGCGg -3'
miRNA:   3'- ucuuGGCGcUAUAG----UGCUAGGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 40006 0.66 0.908381
Target:  5'- -cGACgGCGAUGUC-CGAUCUGaGCa -3'
miRNA:   3'- ucUUGgCGCUAUAGuGCUAGGUaCGc -5'
24314 5' -50.4 NC_005263.2 + 26324 0.67 0.894155
Target:  5'- cGAugCGCGAgugauUCGCGccacUCGUGCGg -3'
miRNA:   3'- uCUugGCGCUau---AGUGCua--GGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 1231 0.67 0.881946
Target:  5'- gGGGACgagCGCGAUGUCauccggccaggaugcGCGAUCCggGUa -3'
miRNA:   3'- -UCUUG---GCGCUAUAG---------------UGCUAGGuaCGc -5'
24314 5' -50.4 NC_005263.2 + 12085 0.67 0.878782
Target:  5'- -cGACCGCGAaccagAUCGCGAgcaCgGUGCu -3'
miRNA:   3'- ucUUGGCGCUa----UAGUGCUa--GgUACGc -5'
24314 5' -50.4 NC_005263.2 + 19283 0.67 0.870679
Target:  5'- aGGAgcGCCGCGugcgcGUCACGGUcaCCGUGaCGc -3'
miRNA:   3'- -UCU--UGGCGCua---UAGUGCUA--GGUAC-GC- -5'
24314 5' -50.4 NC_005263.2 + 44528 0.67 0.870679
Target:  5'- --cGCUGCGAUGUgGCGAaCgAUGUGg -3'
miRNA:   3'- ucuUGGCGCUAUAgUGCUaGgUACGC- -5'
24314 5' -50.4 NC_005263.2 + 39097 0.68 0.826313
Target:  5'- cGGACgGCGAguacgCGCGAcUCGUGCGc -3'
miRNA:   3'- uCUUGgCGCUaua--GUGCUaGGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 19028 0.69 0.786787
Target:  5'- uGAACCGCGccUAUCGCG--CCGUaGCGg -3'
miRNA:   3'- uCUUGGCGCu-AUAGUGCuaGGUA-CGC- -5'
24314 5' -50.4 NC_005263.2 + 42931 0.7 0.73356
Target:  5'- aAGAAUCGCuacccggacGAgAUCACGGcCCGUGCGu -3'
miRNA:   3'- -UCUUGGCG---------CUaUAGUGCUaGGUACGC- -5'
24314 5' -50.4 NC_005263.2 + 18516 0.71 0.688916
Target:  5'- cGGAUCGCGAUGgaCGCGAUCaaaGCGg -3'
miRNA:   3'- uCUUGGCGCUAUa-GUGCUAGguaCGC- -5'
24314 5' -50.4 NC_005263.2 + 29584 0.72 0.643322
Target:  5'- cGAGCCGCuuugAUCGCG-UCCAUcGCGa -3'
miRNA:   3'- uCUUGGCGcua-UAGUGCuAGGUA-CGC- -5'
24314 5' -50.4 NC_005263.2 + 7990 0.77 0.358961
Target:  5'- uGGAUCGUGAUAUCGCGGUUCuUGCc -3'
miRNA:   3'- uCUUGGCGCUAUAGUGCUAGGuACGc -5'
24314 5' -50.4 NC_005263.2 + 40118 1.11 0.002229
Target:  5'- aAGAACCGCGAUAUCACGAUCCAUGCGg -3'
miRNA:   3'- -UCUUGGCGCUAUAGUGCUAGGUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.