miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 27307 0.66 0.70523
Target:  5'- -cAGaAAUACCAcggcgcgACCCGAcgCGCCGaCGAu -3'
miRNA:   3'- uuUC-UUGUGGU-------UGGGCUa-GCGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 24663 0.67 0.695261
Target:  5'- ---uAGCACuCAcCCCGAUCGCCGaacauCGAg -3'
miRNA:   3'- uuucUUGUG-GUuGGGCUAGCGGC-----GCU- -5'
24316 3' -53.9 NC_005263.2 + 24398 0.67 0.695261
Target:  5'- gGGAGAACAUCGcgcaagcgACCCGGUUGaCGCa- -3'
miRNA:   3'- -UUUCUUGUGGU--------UGGGCUAGCgGCGcu -5'
24316 3' -53.9 NC_005263.2 + 1154 0.67 0.695261
Target:  5'- ----uGCACCGcguAUCCGAUCGCCuCGGc -3'
miRNA:   3'- uuucuUGUGGU---UGGGCUAGCGGcGCU- -5'
24316 3' -53.9 NC_005263.2 + 40892 0.67 0.684124
Target:  5'- ---uGGCGCCGucGCCUGAUCGCUG-GAa -3'
miRNA:   3'- uuucUUGUGGU--UGGGCUAGCGGCgCU- -5'
24316 3' -53.9 NC_005263.2 + 36207 0.67 0.684124
Target:  5'- cGAAGAGCGCCuGCacgagcaCGAgauUCGgCGCGAg -3'
miRNA:   3'- -UUUCUUGUGGuUGg------GCU---AGCgGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 46653 0.67 0.672935
Target:  5'- ----uGCugCAGCgCCGcgagCGCCGCGAa -3'
miRNA:   3'- uuucuUGugGUUG-GGCua--GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 5842 0.67 0.672935
Target:  5'- --uGAACGCgCAACCCGccugcAUUGCUGCa- -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----UAGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 42642 0.67 0.671814
Target:  5'- cGAAGcAGCGCCGACguggcaaCCGAUCGCUacuGCGc -3'
miRNA:   3'- -UUUC-UUGUGGUUG-------GGCUAGCGG---CGCu -5'
24316 3' -53.9 NC_005263.2 + 28230 0.67 0.661705
Target:  5'- ----uGCAUCGGCCgCGcUCGCCGCGc -3'
miRNA:   3'- uuucuUGUGGUUGG-GCuAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 47177 0.67 0.650447
Target:  5'- --cGggUGCCAACCCGuucgaugCGUCGaCGAg -3'
miRNA:   3'- uuuCuuGUGGUUGGGCua-----GCGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 9754 0.68 0.639171
Target:  5'- cGAGGcGCAUUucgCCGGUCGCCGCGu -3'
miRNA:   3'- -UUUCuUGUGGuugGGCUAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 7986 0.68 0.638043
Target:  5'- -cAGAGCugCAcgagucgGCCCGAU-GCCGUGu -3'
miRNA:   3'- uuUCUUGugGU-------UGGGCUAgCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 3203 0.68 0.616609
Target:  5'- -cGGugaGCCGGCCCGGcgCGCCGCc- -3'
miRNA:   3'- uuUCuugUGGUUGGGCUa-GCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 26035 0.68 0.616609
Target:  5'- --cGGuCACCAcgacACCCGGgaUCGUCGCGGc -3'
miRNA:   3'- uuuCUuGUGGU----UGGGCU--AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 15568 0.68 0.616609
Target:  5'- ---cGugGCCGGCCUGccgacaGUCGCCGCGu -3'
miRNA:   3'- uuucUugUGGUUGGGC------UAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 18631 0.68 0.605344
Target:  5'- -cAGGugG-CAACCCGggCGCCGCu- -3'
miRNA:   3'- uuUCUugUgGUUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 30201 0.68 0.594104
Target:  5'- cGGGGcGCGCCGAUCUGcgCGCCGUu- -3'
miRNA:   3'- -UUUCuUGUGGUUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 37233 0.68 0.594104
Target:  5'- --cGAcgcGCGCCgGugCCGAguucCGCCGCGAc -3'
miRNA:   3'- uuuCU---UGUGG-UugGGCUa---GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 45325 0.69 0.582897
Target:  5'- ------gACCAGCCCGGUCGCgagguCGUGAu -3'
miRNA:   3'- uuucuugUGGUUGGGCUAGCG-----GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.