miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 5' -57.2 NC_005263.2 + 21104 0.66 0.56147
Target:  5'- gGGCGGCGacgagcccggcgcaGCGGGU-GCUgCUcGGCGCg -3'
miRNA:   3'- -CCGCCGC--------------CGUUCAgCGAgGAcUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 18165 0.66 0.558256
Target:  5'- cGGCGGCGGCGuugGcggcaucgucuacguGUCGaaCCguagUGAAUGCg -3'
miRNA:   3'- -CCGCCGCCGU---U---------------CAGCgaGG----ACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 47923 0.66 0.553978
Target:  5'- gGGCgcacgGGCaGCGGGcUCGC-CCcGGGCGCg -3'
miRNA:   3'- -CCG-----CCGcCGUUC-AGCGaGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 3427 0.66 0.55291
Target:  5'- uGCuGCGGCGccGUCGCgaCCUGGuugaccuGCGCg -3'
miRNA:   3'- cCGcCGCCGUu-CAGCGa-GGACU-------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 28228 0.67 0.54758
Target:  5'- cGGCGuCGGCaAacaucgauaccugcgAGUCGCgcaCCUGcACGCg -3'
miRNA:   3'- -CCGCcGCCG-U---------------UCAGCGa--GGACuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 26092 0.67 0.543327
Target:  5'- aGauGCGGcCGAG-CGCgUCCUGGuACGCg -3'
miRNA:   3'- cCgcCGCC-GUUCaGCG-AGGACU-UGCG- -5'
24316 5' -57.2 NC_005263.2 + 42892 0.67 0.543327
Target:  5'- uGGCGuGCcGCg---CGCUcgCCUGGACGCg -3'
miRNA:   3'- -CCGC-CGcCGuucaGCGA--GGACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 22506 0.67 0.532745
Target:  5'- cGGCGGCGGUucGgcggcUGCggCCUGcucGAUGCc -3'
miRNA:   3'- -CCGCCGCCGuuCa----GCGa-GGAC---UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 901 0.67 0.53169
Target:  5'- cGGCGGUcgccgccGGCGGGUUaCUCgUcGACGCa -3'
miRNA:   3'- -CCGCCG-------CCGUUCAGcGAGgAcUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 25017 0.67 0.522237
Target:  5'- uGCGGUGGC-GGUgGCUgC-GGugGCg -3'
miRNA:   3'- cCGCCGCCGuUCAgCGAgGaCUugCG- -5'
24316 5' -57.2 NC_005263.2 + 6632 0.67 0.51181
Target:  5'- cGCGGuCGaGCAgucgcgcgucGGUCGCUUCacgugcgGGGCGCa -3'
miRNA:   3'- cCGCC-GC-CGU----------UCAGCGAGGa------CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 1512 0.67 0.50147
Target:  5'- aGCGaCGGCGAGUCag-CCUGcAGCGUg -3'
miRNA:   3'- cCGCcGCCGUUCAGcgaGGAC-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 35540 0.67 0.500442
Target:  5'- cGGCGGCGcGCGGGcgggCGCUacggcgccgccggCCgccgcGAACGUg -3'
miRNA:   3'- -CCGCCGC-CGUUCa---GCGA-------------GGa----CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 8853 0.68 0.491224
Target:  5'- aGGCGGCGcGCGGGgCGCgagCCccgcuAUGCg -3'
miRNA:   3'- -CCGCCGC-CGUUCaGCGa--GGacu--UGCG- -5'
24316 5' -57.2 NC_005263.2 + 45493 0.68 0.491224
Target:  5'- cGCGGuCGGCcuGUCGCgcaaUUGGGCGa -3'
miRNA:   3'- cCGCC-GCCGuuCAGCGag--GACUUGCg -5'
24316 5' -57.2 NC_005263.2 + 22385 0.68 0.481075
Target:  5'- cGGCGGCaucgGGCAGGcCGCgaaCgu-ACGCg -3'
miRNA:   3'- -CCGCCG----CCGUUCaGCGag-GacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 6327 0.68 0.481075
Target:  5'- -cCGGCGcGCGAGUCGC-CC---GCGCc -3'
miRNA:   3'- ccGCCGC-CGUUCAGCGaGGacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 45168 0.68 0.481075
Target:  5'- cGGCGGCGGCGAuggCGCaUUCgcGAGCa- -3'
miRNA:   3'- -CCGCCGCCGUUca-GCG-AGGa-CUUGcg -5'
24316 5' -57.2 NC_005263.2 + 43951 0.68 0.467041
Target:  5'- cGCGGCGcGCuguacacgaacUCGUUCCUGAccgucuACGCg -3'
miRNA:   3'- cCGCCGC-CGuuc--------AGCGAGGACU------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 25709 0.68 0.461091
Target:  5'- cGGCGGCGcGUAcGuUCGCggCCUGcccGAUGCc -3'
miRNA:   3'- -CCGCCGC-CGUuC-AGCGa-GGAC---UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.