miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24317 3' -58.5 NC_005263.2 + 11716 0.66 0.547616
Target:  5'- aGgGCGUCAUGUCgaGCUUgaugucgaaGCCCgCGUUGc -3'
miRNA:   3'- gUgCGCAGUACAG--CGAG---------CGGG-GCAGC- -5'
24317 3' -58.5 NC_005263.2 + 23837 0.66 0.526742
Target:  5'- aGCGCcgGUCGUGUUGUUCGUgaCUGUCc -3'
miRNA:   3'- gUGCG--CAGUACAGCGAGCGg-GGCAGc -5'
24317 3' -58.5 NC_005263.2 + 24409 0.66 0.526742
Target:  5'- uGCG-GUCAUGUCGaUCGCCUCacgCGg -3'
miRNA:   3'- gUGCgCAGUACAGCgAGCGGGGca-GC- -5'
24317 3' -58.5 NC_005263.2 + 698 0.66 0.516416
Target:  5'- aGCGCGaUCGUGcCGC-CGCCCgCGa-- -3'
miRNA:   3'- gUGCGC-AGUACaGCGaGCGGG-GCagc -5'
24317 3' -58.5 NC_005263.2 + 19076 0.67 0.456374
Target:  5'- cCGCGCGUCAguacggcGUCGCggugCGCaacgcacugCCgGUCGg -3'
miRNA:   3'- -GUGCGCAGUa------CAGCGa---GCG---------GGgCAGC- -5'
24317 3' -58.5 NC_005263.2 + 45728 0.68 0.437201
Target:  5'- gGCGcCGUCAUGg-GUUaCGCCgCGUCGa -3'
miRNA:   3'- gUGC-GCAGUACagCGA-GCGGgGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 17623 0.68 0.427789
Target:  5'- gGCGCGg---GUCGCgcaucgaugCGUUCCGUCGg -3'
miRNA:   3'- gUGCGCaguaCAGCGa--------GCGGGGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 13923 0.68 0.427789
Target:  5'- aGCGCGUCca--UGCUCGUgCCGUUGa -3'
miRNA:   3'- gUGCGCAGuacaGCGAGCGgGGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 2209 0.68 0.418498
Target:  5'- gUACGCGaUCGUGUaguUGUUCGCCgCGUUc -3'
miRNA:   3'- -GUGCGC-AGUACA---GCGAGCGGgGCAGc -5'
24317 3' -58.5 NC_005263.2 + 39403 0.68 0.418498
Target:  5'- gACGCGgccgaCcUGUCGC-CGCaCCUGUCGu -3'
miRNA:   3'- gUGCGCa----GuACAGCGaGCG-GGGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 23946 0.68 0.418498
Target:  5'- uGCGCGUCGUGagCGUgacggUGCcaCCCGUCa -3'
miRNA:   3'- gUGCGCAGUACa-GCGa----GCG--GGGCAGc -5'
24317 3' -58.5 NC_005263.2 + 34201 0.68 0.418498
Target:  5'- gACGCG-C-UGUCGUUCGUCaCGUCGu -3'
miRNA:   3'- gUGCGCaGuACAGCGAGCGGgGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 3547 0.69 0.382596
Target:  5'- gGCGuCGUcCAUGUC-CUCGCCaagCGUCGc -3'
miRNA:   3'- gUGC-GCA-GUACAGcGAGCGGg--GCAGC- -5'
24317 3' -58.5 NC_005263.2 + 6763 0.69 0.36543
Target:  5'- uCGCGCG-CcgGgcgaGCUCgGCCUCGUCGa -3'
miRNA:   3'- -GUGCGCaGuaCag--CGAG-CGGGGCAGC- -5'
24317 3' -58.5 NC_005263.2 + 26930 0.69 0.340694
Target:  5'- gCGCGCGUCcg--CGUcCGCCCCGUgGc -3'
miRNA:   3'- -GUGCGCAGuacaGCGaGCGGGGCAgC- -5'
24317 3' -58.5 NC_005263.2 + 40829 1.08 0.000526
Target:  5'- gCACGCGUCAUGUCGCUCGCCCCGUCGa -3'
miRNA:   3'- -GUGCGCAGUACAGCGAGCGGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.