miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24317 5' -53 NC_005263.2 + 47815 0.66 0.798602
Target:  5'- cAUCAuuccGCAG-ACGUCGAccgugaccgugcucGGuGGCGUGa -3'
miRNA:   3'- -UAGUu---CGUCuUGCAGCU--------------UCuCCGCGC- -5'
24317 5' -53 NC_005263.2 + 18739 0.66 0.791567
Target:  5'- aGUCAAGCgccAGAucggcGCGaUCGuAGGcGGCGCGg -3'
miRNA:   3'- -UAGUUCG---UCU-----UGC-AGCuUCU-CCGCGC- -5'
24317 5' -53 NC_005263.2 + 31213 0.66 0.771002
Target:  5'- gAUCGAGUccuuccGGAACGgcUUGcAGGGGCGCu -3'
miRNA:   3'- -UAGUUCG------UCUUGC--AGCuUCUCCGCGc -5'
24317 5' -53 NC_005263.2 + 45609 0.66 0.760484
Target:  5'- uGUCGAGgAGAucgugcaucACGUcuaCGAuGAGGCGCu -3'
miRNA:   3'- -UAGUUCgUCU---------UGCA---GCUuCUCCGCGc -5'
24317 5' -53 NC_005263.2 + 8957 0.67 0.728136
Target:  5'- uGUCGAGCA--ACGUCGccGAcacGGUGCGc -3'
miRNA:   3'- -UAGUUCGUcuUGCAGCuuCU---CCGCGC- -5'
24317 5' -53 NC_005263.2 + 35449 0.67 0.728136
Target:  5'- cAUCGAcGCGGuAGCGUUGAcAGcGGGCGCc -3'
miRNA:   3'- -UAGUU-CGUC-UUGCAGCU-UC-UCCGCGc -5'
24317 5' -53 NC_005263.2 + 30769 0.67 0.706037
Target:  5'- -gCGAuGCcGAACGUCGAAGccaccGGCGCc -3'
miRNA:   3'- uaGUU-CGuCUUGCAGCUUCu----CCGCGc -5'
24317 5' -53 NC_005263.2 + 8916 0.67 0.706037
Target:  5'- ---cGGCAGGAUGUCGucGAGGUcgGUGa -3'
miRNA:   3'- uaguUCGUCUUGCAGCuuCUCCG--CGC- -5'
24317 5' -53 NC_005263.2 + 41749 0.67 0.706037
Target:  5'- uUCGGGCGGcACGgcgcgaucaaCGAGGAgaucGGCGCGg -3'
miRNA:   3'- uAGUUCGUCuUGCa---------GCUUCU----CCGCGC- -5'
24317 5' -53 NC_005263.2 + 39982 0.67 0.706037
Target:  5'- gAUCGAGCA-AGCGcUCGAAGAGuGCcCGa -3'
miRNA:   3'- -UAGUUCGUcUUGC-AGCUUCUC-CGcGC- -5'
24317 5' -53 NC_005263.2 + 26052 0.67 0.694866
Target:  5'- cGUCGAGCuucgcuGCGUCGAGcugcuGGCGCa -3'
miRNA:   3'- -UAGUUCGucu---UGCAGCUUcu---CCGCGc -5'
24317 5' -53 NC_005263.2 + 45693 0.68 0.67234
Target:  5'- cGUCGAGCGGAugugucGCGgCGAAGcguGGUGCc -3'
miRNA:   3'- -UAGUUCGUCU------UGCaGCUUCu--CCGCGc -5'
24317 5' -53 NC_005263.2 + 31009 0.68 0.67234
Target:  5'- gAUCGuGCAGca-GUgCGgcGAGGCGCGg -3'
miRNA:   3'- -UAGUuCGUCuugCA-GCuuCUCCGCGC- -5'
24317 5' -53 NC_005263.2 + 42702 0.68 0.66101
Target:  5'- ----cGCAGGGCGUUGcAGAGG-GCGg -3'
miRNA:   3'- uaguuCGUCUUGCAGCuUCUCCgCGC- -5'
24317 5' -53 NC_005263.2 + 37825 0.7 0.536859
Target:  5'- -gCAGGCcaAGGAUG-CGAAGcGGCGCGa -3'
miRNA:   3'- uaGUUCG--UCUUGCaGCUUCuCCGCGC- -5'
24317 5' -53 NC_005263.2 + 17282 0.71 0.504156
Target:  5'- gGUCAAGCAGAccugGCG-CGAGGcagucgccacGGCGCGc -3'
miRNA:   3'- -UAGUUCGUCU----UGCaGCUUCu---------CCGCGC- -5'
24317 5' -53 NC_005263.2 + 3368 0.71 0.482839
Target:  5'- aAUCGAGCGGAACaauGUCGAc-GGGCGUc -3'
miRNA:   3'- -UAGUUCGUCUUG---CAGCUucUCCGCGc -5'
24317 5' -53 NC_005263.2 + 33659 0.71 0.472345
Target:  5'- uGUCAAGCGcGGA-GUCGAugcGGGCGCGa -3'
miRNA:   3'- -UAGUUCGU-CUUgCAGCUuc-UCCGCGC- -5'
24317 5' -53 NC_005263.2 + 10157 0.73 0.392944
Target:  5'- -gCGGGCAGcuuGGCGUCGccGAGaGCGCGa -3'
miRNA:   3'- uaGUUCGUC---UUGCAGCuuCUC-CGCGC- -5'
24317 5' -53 NC_005263.2 + 15524 0.74 0.338528
Target:  5'- uUCGAGCAGAuCGUCGAuGAauuuaucaaucucGGCGCa -3'
miRNA:   3'- uAGUUCGUCUuGCAGCUuCU-------------CCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.