miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 3' -58.5 NC_005263.2 + 36789 0.66 0.473666
Target:  5'- -cGGCaG-CGUGUUGCcUGGCGAGGCc -3'
miRNA:   3'- uaUCG-CaGCACGACGcGCUGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 26198 0.66 0.463672
Target:  5'- --cGCG-CGgcgGCcGCGCGAUGcGGCGg -3'
miRNA:   3'- uauCGCaGCa--CGaCGCGCUGCuCCGC- -5'
24318 3' -58.5 NC_005263.2 + 30516 0.67 0.453789
Target:  5'- --cGCGUCGUgaccccGCUGCGCGAgcagcuCGAuGCGc -3'
miRNA:   3'- uauCGCAGCA------CGACGCGCU------GCUcCGC- -5'
24318 3' -58.5 NC_005263.2 + 24804 0.67 0.453789
Target:  5'- -gGGCGUCG-GCgGCGCGuauucggccuauACGGccGGCGg -3'
miRNA:   3'- uaUCGCAGCaCGaCGCGC------------UGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 19855 0.67 0.453789
Target:  5'- -cAGCG-CGUGCaggUGCGCGACucgcAGGUa -3'
miRNA:   3'- uaUCGCaGCACG---ACGCGCUGc---UCCGc -5'
24318 3' -58.5 NC_005263.2 + 4357 0.67 0.453789
Target:  5'- uUAGUGUUGUGUcaaUGCGCGgucagcgcauGCGGucGGCGa -3'
miRNA:   3'- uAUCGCAGCACG---ACGCGC----------UGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 28438 0.67 0.424846
Target:  5'- ---aCGUCGcggGCaGCGCGGCGuAGGCa -3'
miRNA:   3'- uaucGCAGCa--CGaCGCGCUGC-UCCGc -5'
24318 3' -58.5 NC_005263.2 + 14245 0.67 0.415447
Target:  5'- cGUGGCGUgCGgGCUGgcuUGCGGCGGccGGCGc -3'
miRNA:   3'- -UAUCGCA-GCaCGAC---GCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 4089 0.67 0.406175
Target:  5'- -cGGUG-CGUugUGCGCGACGAauGGCGa -3'
miRNA:   3'- uaUCGCaGCAcgACGCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 24702 0.68 0.379156
Target:  5'- -cGGCGcgccgaaCGUGCcGgGCGGCGcAGGCGg -3'
miRNA:   3'- uaUCGCa------GCACGaCgCGCUGC-UCCGC- -5'
24318 3' -58.5 NC_005263.2 + 3175 0.68 0.379156
Target:  5'- cGUGGCG-CGgaauaacugccGCUGCGCGucgGCGAGcGCGg -3'
miRNA:   3'- -UAUCGCaGCa----------CGACGCGC---UGCUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 18877 0.68 0.361825
Target:  5'- -cGGCG-CGccGCUGCGCGcCGAcGGCa -3'
miRNA:   3'- uaUCGCaGCa-CGACGCGCuGCU-CCGc -5'
24318 3' -58.5 NC_005263.2 + 5477 0.71 0.237285
Target:  5'- -cGGCGcugcuUCGUGCUGCuCGACagGGGGCGc -3'
miRNA:   3'- uaUCGC-----AGCACGACGcGCUG--CUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 1427 0.71 0.237285
Target:  5'- --cGCGcCGccuugGCUGCGCG-CGAGGCu -3'
miRNA:   3'- uauCGCaGCa----CGACGCGCuGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 36501 0.72 0.213752
Target:  5'- -aGGCGaaGUGCUGCGCcacuucaucGCGGGGCGc -3'
miRNA:   3'- uaUCGCagCACGACGCGc--------UGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 1173 0.72 0.192252
Target:  5'- -cGGCGacuugugccUCGUGCUGCGCGGC-AGcGCGu -3'
miRNA:   3'- uaUCGC---------AGCACGACGCGCUGcUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 16425 0.74 0.150712
Target:  5'- -cGGCGUCG-GCgcugGCGCGGCG-GGCc -3'
miRNA:   3'- uaUCGCAGCaCGa---CGCGCUGCuCCGc -5'
24318 3' -58.5 NC_005263.2 + 30364 0.66 0.504273
Target:  5'- -aGGuCGUCGUGCaGCGCuuCGGGGa- -3'
miRNA:   3'- uaUC-GCAGCACGaCGCGcuGCUCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.