Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24318 | 5' | -56.8 | NC_005263.2 | + | 14079 | 0.69 | 0.370172 |
Target: 5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3' miRNA: 3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 15569 | 0.69 | 0.413037 |
Target: 5'- cGCGCUgaacgccgaaugacGGUagcgcgGCCGGUGCACGAg--- -3' miRNA: 3'- aCGCGG--------------UCAa-----CGGCCACGUGCUguac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 9082 | 0.69 | 0.39626 |
Target: 5'- cGUGCCAGUUcgggucgaucgGCCGGUuCACGaacacggGCAUGa -3' miRNA: 3'- aCGCGGUCAA-----------CGGCCAcGUGC-------UGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 13058 | 0.69 | 0.385322 |
Target: 5'- aUGUGCuCGGUuucacgggcgugucUGCCGGUGUcggACGGCAg- -3' miRNA: 3'- -ACGCG-GUCA--------------ACGGCCACG---UGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 30303 | 0.69 | 0.379034 |
Target: 5'- aGCGCCGGgcgcgGCCGGcGUcuugACGACGa- -3' miRNA: 3'- aCGCGGUCaa---CGGCCaCG----UGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 20705 | 0.68 | 0.454827 |
Target: 5'- cUGCGCCGGUcgugacgcaGCCGGUcaGCGCGcCGg- -3' miRNA: 3'- -ACGCGGUCAa--------CGGCCA--CGUGCuGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 32693 | 0.68 | 0.454827 |
Target: 5'- gUGCGUCAGcagGUCGGUcacgagcgcauGCACGGCGg- -3' miRNA: 3'- -ACGCGGUCaa-CGGCCA-----------CGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 31598 | 0.68 | 0.454827 |
Target: 5'- -uUGCCGGUuggucaUGCCGGU-CGCGACGg- -3' miRNA: 3'- acGCGGUCA------ACGGCCAcGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 37238 | 0.68 | 0.454827 |
Target: 5'- cGCGCCGG-UGCCGaGUuccGCcGCGACGc- -3' miRNA: 3'- aCGCGGUCaACGGC-CA---CG-UGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 802 | 0.68 | 0.425423 |
Target: 5'- cGUGCCGGccGCCGGcGCAgGACc-- -3' miRNA: 3'- aCGCGGUCaaCGGCCaCGUgCUGuac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 9971 | 0.68 | 0.452833 |
Target: 5'- gUGCGaCCAG-UGCCGGgcaggccguucaGCAUGACGa- -3' miRNA: 3'- -ACGC-GGUCaACGGCCa-----------CGUGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 9127 | 0.67 | 0.527358 |
Target: 5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3' miRNA: 3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 46838 | 0.67 | 0.495669 |
Target: 5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3' miRNA: 3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 2654 | 0.67 | 0.516706 |
Target: 5'- cGCGCCGG--GCUcgaGGUGCA-GGCGUGc -3' miRNA: 3'- aCGCGGUCaaCGG---CCACGUgCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 38574 | 0.67 | 0.516706 |
Target: 5'- cGCGUCGGUcgcUGCCGc-GCACGGCc-- -3' miRNA: 3'- aCGCGGUCA---ACGGCcaCGUGCUGuac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 41815 | 0.67 | 0.516706 |
Target: 5'- cGCGCCGGUguUGCUGuuUGCGCaGACGc- -3' miRNA: 3'- aCGCGGUCA--ACGGCc-ACGUG-CUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 24850 | 0.66 | 0.58169 |
Target: 5'- gGUGCCGGUgcgccaGCCGGcgGCuACGGCc-- -3' miRNA: 3'- aCGCGGUCAa-----CGGCCa-CG-UGCUGuac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 19902 | 0.66 | 0.559773 |
Target: 5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3' miRNA: 3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 29367 | 0.66 | 0.559773 |
Target: 5'- gGCGCCGGUaacCCGGcGC-CGACGc- -3' miRNA: 3'- aCGCGGUCAac-GGCCaCGuGCUGUac -5' |
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24318 | 5' | -56.8 | NC_005263.2 | + | 10390 | 0.66 | 0.557593 |
Target: 5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3' miRNA: 3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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