miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 37708 0.66 0.533789
Target:  5'- cGCGCCGGacccgcucgccgGCCGGcccgGCGCGugGc- -3'
miRNA:   3'- aCGCGGUCaa----------CGGCCa---CGUGCugUac -5'
24318 5' -56.8 NC_005263.2 + 37937 0.71 0.312187
Target:  5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3'
miRNA:   3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 38574 0.67 0.516706
Target:  5'- cGCGUCGGUcgcUGCCGc-GCACGGCc-- -3'
miRNA:   3'- aCGCGGUCA---ACGGCcaCGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 40979 0.66 0.592717
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 41075 0.76 0.132741
Target:  5'- aUGCGCCAuccGUCGGcGCGCGACAUGc -3'
miRNA:   3'- -ACGCGGUcaaCGGCCaCGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 41815 0.67 0.516706
Target:  5'- cGCGCCGGUguUGCUGuuUGCGCaGACGc- -3'
miRNA:   3'- aCGCGGUCA--ACGGCc-ACGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 42159 1.09 0.000551
Target:  5'- gUGCGCCAGUUGCCGGUGCACGACAUGa -3'
miRNA:   3'- -ACGCGGUCAACGGCCACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 42207 0.66 0.592717
Target:  5'- cGCGCCGGgcGCUGuuGUGCuuGAUAa- -3'
miRNA:   3'- aCGCGGUCaaCGGC--CACGugCUGUac -5'
24318 5' -56.8 NC_005263.2 + 42567 0.8 0.077113
Target:  5'- cGCGCCAggccGUUGCCGGc-CACGGCAUGa -3'
miRNA:   3'- aCGCGGU----CAACGGCCacGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 43583 0.7 0.361453
Target:  5'- aGCGCCGcacGUCGGUagagaauguGCGCGACGUGc -3'
miRNA:   3'- aCGCGGUcaaCGGCCA---------CGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 44185 0.76 0.12906
Target:  5'- gGCGCUAGgccUGCCGGUGCAgaaaGACAc- -3'
miRNA:   3'- aCGCGGUCa--ACGGCCACGUg---CUGUac -5'
24318 5' -56.8 NC_005263.2 + 45796 0.66 0.58169
Target:  5'- -cCGCCAGUucaacgcgggcgUGCCGGccacggcGCACGACcUGc -3'
miRNA:   3'- acGCGGUCA------------ACGGCCa------CGUGCUGuAC- -5'
24318 5' -56.8 NC_005263.2 + 46173 0.66 0.538092
Target:  5'- cGuCGCCGG-UGCCGGcGCGCu-CGUGc -3'
miRNA:   3'- aC-GCGGUCaACGGCCaCGUGcuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 46838 0.67 0.495669
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 47810 0.66 0.570706
Target:  5'- gGCGCUuGggGCUucauuaucgGGUGCGCGGCuAUGc -3'
miRNA:   3'- aCGCGGuCaaCGG---------CCACGUGCUG-UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.