miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 31598 0.68 0.454827
Target:  5'- -uUGCCGGUuggucaUGCCGGU-CGCGACGg- -3'
miRNA:   3'- acGCGGUCA------ACGGCCAcGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 30303 0.69 0.379034
Target:  5'- aGCGCCGGgcgcgGCCGGcGUcuugACGACGa- -3'
miRNA:   3'- aCGCGGUCaa---CGGCCaCG----UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 29367 0.66 0.559773
Target:  5'- gGCGCCGGUaacCCGGcGC-CGACGc- -3'
miRNA:   3'- aCGCGGUCAac-GGCCaCGuGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 28949 0.7 0.352877
Target:  5'- cGCGCCGGcggaUGCaCGGU-CACGACGa- -3'
miRNA:   3'- aCGCGGUCa---ACG-GCCAcGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 28191 0.7 0.320032
Target:  5'- gGCGCCuucugcaugccGUUGCCGGcguucacagGCACGGCGUc -3'
miRNA:   3'- aCGCGGu----------CAACGGCCa--------CGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 27380 0.66 0.548899
Target:  5'- cGCGgCGGcgGCCGGcGCGCuGACcgGc -3'
miRNA:   3'- aCGCgGUCaaCGGCCaCGUG-CUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 26632 0.66 0.538092
Target:  5'- gUGCGCCGGauUUGCCaGUGgCGCcGCAg- -3'
miRNA:   3'- -ACGCGGUC--AACGGcCAC-GUGcUGUac -5'
24318 5' -56.8 NC_005263.2 + 24850 0.66 0.58169
Target:  5'- gGUGCCGGUgcgccaGCCGGcgGCuACGGCc-- -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCa-CG-UGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 24705 0.7 0.361453
Target:  5'- cGCGCCGaacgUGCCGGgcgGCGCaGGCGg- -3'
miRNA:   3'- aCGCGGUca--ACGGCCa--CGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 22182 0.75 0.156926
Target:  5'- aGCGCCGGgcgaaCCGGUGCugG-CGUGg -3'
miRNA:   3'- aCGCGGUCaac--GGCCACGugCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 20882 0.74 0.200683
Target:  5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3'
miRNA:   3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 20705 0.68 0.454827
Target:  5'- cUGCGCCGGUcgugacgcaGCCGGUcaGCGCGcCGg- -3'
miRNA:   3'- -ACGCGGUCAa--------CGGCCA--CGUGCuGUac -5'
24318 5' -56.8 NC_005263.2 + 19902 0.66 0.559773
Target:  5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3'
miRNA:   3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 19806 0.66 0.570706
Target:  5'- gGUGCCGGUcgcacgGCCGGUacuGCACaAgGUGa -3'
miRNA:   3'- aCGCGGUCAa-----CGGCCA---CGUGcUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 18953 0.71 0.296938
Target:  5'- cGCGCCGGUUcgagcgcaGCCG--GCACGACGUc -3'
miRNA:   3'- aCGCGGUCAA--------CGGCcaCGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 18210 0.7 0.361453
Target:  5'- aUGCGCgCAGUaucacacgcUGuCCGGccGCGCGACGUa -3'
miRNA:   3'- -ACGCG-GUCA---------AC-GGCCa-CGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 15569 0.69 0.413037
Target:  5'- cGCGCUgaacgccgaaugacGGUagcgcgGCCGGUGCACGAg--- -3'
miRNA:   3'- aCGCGG--------------UCAa-----CGGCCACGUGCUguac -5'
24318 5' -56.8 NC_005263.2 + 14169 0.73 0.229332
Target:  5'- cGgGCCGGcgGCCGGUGUGCGcgagcuGCGUGc -3'
miRNA:   3'- aCgCGGUCaaCGGCCACGUGC------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 14079 0.69 0.370172
Target:  5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 13302 0.76 0.148451
Target:  5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3'
miRNA:   3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.