miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 45796 0.66 0.58169
Target:  5'- -cCGCCAGUucaacgcgggcgUGCCGGccacggcGCACGACcUGc -3'
miRNA:   3'- acGCGGUCA------------ACGGCCa------CGUGCUGuAC- -5'
24318 5' -56.8 NC_005263.2 + 46838 0.67 0.495669
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9971 0.68 0.452833
Target:  5'- gUGCGaCCAG-UGCCGGgcaggccguucaGCAUGACGa- -3'
miRNA:   3'- -ACGC-GGUCaACGGCCa-----------CGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 41075 0.76 0.132741
Target:  5'- aUGCGCCAuccGUCGGcGCGCGACAUGc -3'
miRNA:   3'- -ACGCGGUcaaCGGCCaCGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 2091 0.75 0.165837
Target:  5'- cGUGCCAGUUGUCGGUGUAauCGGgGUc -3'
miRNA:   3'- aCGCGGUCAACGGCCACGU--GCUgUAc -5'
24318 5' -56.8 NC_005263.2 + 18953 0.71 0.296938
Target:  5'- cGCGCCGGUUcgagcgcaGCCG--GCACGACGUc -3'
miRNA:   3'- aCGCGGUCAA--------CGGCcaCGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 37937 0.71 0.312187
Target:  5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3'
miRNA:   3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 28949 0.7 0.352877
Target:  5'- cGCGCCGGcggaUGCaCGGU-CACGACGa- -3'
miRNA:   3'- aCGCGGUCa---ACG-GCCAcGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 24705 0.7 0.361453
Target:  5'- cGCGCCGaacgUGCCGGgcgGCGCaGGCGg- -3'
miRNA:   3'- aCGCGGUca--ACGGCCa--CGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 30303 0.69 0.379034
Target:  5'- aGCGCCGGgcgcgGCCGGcGUcuugACGACGa- -3'
miRNA:   3'- aCGCGGUCaa---CGGCCaCG----UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 9765 0.69 0.379034
Target:  5'- -uCGCCGGUcGCCGcGUGCACGGuCGc- -3'
miRNA:   3'- acGCGGUCAaCGGC-CACGUGCU-GUac -5'
24318 5' -56.8 NC_005263.2 + 13058 0.69 0.385322
Target:  5'- aUGUGCuCGGUuucacgggcgugucUGCCGGUGUcggACGGCAg- -3'
miRNA:   3'- -ACGCG-GUCA--------------ACGGCCACG---UGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 9082 0.69 0.39626
Target:  5'- cGUGCCAGUUcgggucgaucgGCCGGUuCACGaacacggGCAUGa -3'
miRNA:   3'- aCGCGGUCAA-----------CGGCCAcGUGC-------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 8817 0.69 0.415875
Target:  5'- aUGCGCC---UGCCGGccGCuCGGCGUGc -3'
miRNA:   3'- -ACGCGGucaACGGCCa-CGuGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 42207 0.66 0.592717
Target:  5'- cGCGCCGGgcGCUGuuGUGCuuGAUAa- -3'
miRNA:   3'- aCGCGGUCaaCGGC--CACGugCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.