miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 5' -56.8 NC_005263.2 + 19902 0.66 0.559773
Target:  5'- cGUGCCuGUgaacGCCGGca-ACGGCAUGc -3'
miRNA:   3'- aCGCGGuCAa---CGGCCacgUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 10390 0.66 0.557593
Target:  5'- cGCGCCGGgccgGCCGGcgagcggguccgGCGCG-CGUu -3'
miRNA:   3'- aCGCGGUCaa--CGGCCa-----------CGUGCuGUAc -5'
24318 5' -56.8 NC_005263.2 + 27380 0.66 0.548899
Target:  5'- cGCGgCGGcgGCCGGcGCGCuGACcgGc -3'
miRNA:   3'- aCGCgGUCaaCGGCCaCGUG-CUGuaC- -5'
24318 5' -56.8 NC_005263.2 + 46173 0.66 0.538092
Target:  5'- cGuCGCCGG-UGCCGGcGCGCu-CGUGc -3'
miRNA:   3'- aC-GCGGUCaACGGCCaCGUGcuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 9127 0.67 0.527358
Target:  5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3'
miRNA:   3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 41815 0.67 0.516706
Target:  5'- cGCGCCGGUguUGCUGuuUGCGCaGACGc- -3'
miRNA:   3'- aCGCGGUCA--ACGGCc-ACGUG-CUGUac -5'
24318 5' -56.8 NC_005263.2 + 38574 0.67 0.516706
Target:  5'- cGCGUCGGUcgcUGCCGc-GCACGGCc-- -3'
miRNA:   3'- aCGCGGUCA---ACGGCcaCGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 2654 0.67 0.516706
Target:  5'- cGCGCCGG--GCUcgaGGUGCA-GGCGUGc -3'
miRNA:   3'- aCGCGGUCaaCGG---CCACGUgCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 6128 0.72 0.26136
Target:  5'- --gGCCGGUaUGUCGGUGCGCGAUc-- -3'
miRNA:   3'- acgCGGUCA-ACGGCCACGUGCUGuac -5'
24318 5' -56.8 NC_005263.2 + 28191 0.7 0.320032
Target:  5'- gGCGCCuucugcaugccGUUGCCGGcguucacagGCACGGCGUc -3'
miRNA:   3'- aCGCGGu----------CAACGGCCa--------CGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 43583 0.7 0.361453
Target:  5'- aGCGCCGcacGUCGGUagagaauguGCGCGACGUGc -3'
miRNA:   3'- aCGCGGUcaaCGGCCA---------CGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 14079 0.69 0.370172
Target:  5'- cGCGCCGGcccaUGUCGGcugguaccggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGGUCa---ACGGCC-----------ACGUGCUGUac -5'
24318 5' -56.8 NC_005263.2 + 15569 0.69 0.413037
Target:  5'- cGCGCUgaacgccgaaugacGGUagcgcgGCCGGUGCACGAg--- -3'
miRNA:   3'- aCGCGG--------------UCAa-----CGGCCACGUGCUguac -5'
24318 5' -56.8 NC_005263.2 + 14169 0.73 0.229332
Target:  5'- cGgGCCGGcgGCCGGUGUGCGcgagcuGCGUGc -3'
miRNA:   3'- aCgCGGUCaaCGGCCACGUGC------UGUAC- -5'
24318 5' -56.8 NC_005263.2 + 20882 0.74 0.200683
Target:  5'- cUGCGCCAGUgGCaggaGGcGCACGGgAUGa -3'
miRNA:   3'- -ACGCGGUCAaCGg---CCaCGUGCUgUAC- -5'
24318 5' -56.8 NC_005263.2 + 22182 0.75 0.156926
Target:  5'- aGCGCCGGgcgaaCCGGUGCugG-CGUGg -3'
miRNA:   3'- aCGCGGUCaac--GGCCACGugCuGUAC- -5'
24318 5' -56.8 NC_005263.2 + 13302 0.76 0.148451
Target:  5'- cGCaGCCAGUUGUCGaUGUACGGCAUc -3'
miRNA:   3'- aCG-CGGUCAACGGCcACGUGCUGUAc -5'
24318 5' -56.8 NC_005263.2 + 44185 0.76 0.12906
Target:  5'- gGCGCUAGgccUGCCGGUGCAgaaaGACAc- -3'
miRNA:   3'- aCGCGGUCa--ACGGCCACGUg---CUGUac -5'
24318 5' -56.8 NC_005263.2 + 10547 0.83 0.046897
Target:  5'- uUGCGCgGGUUGUCGGccgucUGCGCGACGUGc -3'
miRNA:   3'- -ACGCGgUCAACGGCC-----ACGUGCUGUAC- -5'
24318 5' -56.8 NC_005263.2 + 40979 0.66 0.592717
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.