miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 3' -52.4 NC_005263.2 + 3565 0.67 0.772718
Target:  5'- aGCGCGuCGGCCGACcACAu------ -3'
miRNA:   3'- gCGUGCuGCCGGCUGuUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 15404 0.67 0.762231
Target:  5'- cCGCACGGCGG---GCAGCAAGccGGUGa -3'
miRNA:   3'- -GCGUGCUGCCggcUGUUGUUUa-CCAU- -5'
24319 3' -52.4 NC_005263.2 + 7210 0.67 0.762231
Target:  5'- uCGCGCGACcaucGCCGGCGAcCAGAaGGc- -3'
miRNA:   3'- -GCGUGCUGc---CGGCUGUU-GUUUaCCau -5'
24319 3' -52.4 NC_005263.2 + 25894 0.67 0.751603
Target:  5'- aCGCcgGCGACGGCCG-CGACGuac-GUAa -3'
miRNA:   3'- -GCG--UGCUGCCGGCuGUUGUuuacCAU- -5'
24319 3' -52.4 NC_005263.2 + 33435 0.67 0.740844
Target:  5'- gCGCGCGuaGCGGUCGGCcACGAGcgcUGGc- -3'
miRNA:   3'- -GCGUGC--UGCCGGCUGuUGUUU---ACCau -5'
24319 3' -52.4 NC_005263.2 + 6839 0.68 0.729968
Target:  5'- gCGCAgCGACGGCgacacgacCGGCGACA---GGUAg -3'
miRNA:   3'- -GCGU-GCUGCCG--------GCUGUUGUuuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 3253 0.68 0.718988
Target:  5'- uGCACGAucUGGUCGAUcg-GAAUGGUAg -3'
miRNA:   3'- gCGUGCU--GCCGGCUGuugUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 32925 0.68 0.718988
Target:  5'- uCGCGCGGCGGCUcGCGucgaucacugcGgAAAUGGUu -3'
miRNA:   3'- -GCGUGCUGCCGGcUGU-----------UgUUUACCAu -5'
24319 3' -52.4 NC_005263.2 + 32721 0.68 0.718988
Target:  5'- uGCACGGCGGCCGGgucgcuaccCGACAGcGUGc-- -3'
miRNA:   3'- gCGUGCUGCCGGCU---------GUUGUU-UACcau -5'
24319 3' -52.4 NC_005263.2 + 14260 0.68 0.718988
Target:  5'- gGCuuGCGGCGGCCGGCGcaacgcgcGCAu-UGGg- -3'
miRNA:   3'- gCG--UGCUGCCGGCUGU--------UGUuuACCau -5'
24319 3' -52.4 NC_005263.2 + 26672 0.68 0.718988
Target:  5'- aCGCGCGACGGCCGcCcAUuGAUGc-- -3'
miRNA:   3'- -GCGUGCUGCCGGCuGuUGuUUACcau -5'
24319 3' -52.4 NC_005263.2 + 18878 0.68 0.707916
Target:  5'- gGCGCGccgcuGCGcGCCGACGGCAAAUa--- -3'
miRNA:   3'- gCGUGC-----UGC-CGGCUGUUGUUUAccau -5'
24319 3' -52.4 NC_005263.2 + 11293 0.68 0.707916
Target:  5'- uGCGCGACGaGCagCGGCAAUuuAUGGc- -3'
miRNA:   3'- gCGUGCUGC-CG--GCUGUUGuuUACCau -5'
24319 3' -52.4 NC_005263.2 + 24040 0.68 0.696765
Target:  5'- aGCugGAucagcaCGGCCGACAACAAc----- -3'
miRNA:   3'- gCGugCU------GCCGGCUGUUGUUuaccau -5'
24319 3' -52.4 NC_005263.2 + 37927 0.68 0.685546
Target:  5'- gGCGCaGGCGcGCCGcCGGCAGccGGUGc -3'
miRNA:   3'- gCGUG-CUGC-CGGCuGUUGUUuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 21194 0.69 0.662958
Target:  5'- aCGCGCG-CGGCgCGG--GCGAGUGGg- -3'
miRNA:   3'- -GCGUGCuGCCG-GCUguUGUUUACCau -5'
24319 3' -52.4 NC_005263.2 + 47312 0.69 0.662958
Target:  5'- gCGC-CGGCGGCCGGCAcGCucaaGGUc -3'
miRNA:   3'- -GCGuGCUGCCGGCUGU-UGuuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 27245 0.69 0.662958
Target:  5'- uCGCGcCGcCGGCCGAUAGCGuuaGGUc -3'
miRNA:   3'- -GCGU-GCuGCCGGCUGUUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 41361 0.69 0.651612
Target:  5'- gCGCGCGAUGGaCGugAcgcGCGAGUGuGUAc -3'
miRNA:   3'- -GCGUGCUGCCgGCugU---UGUUUAC-CAU- -5'
24319 3' -52.4 NC_005263.2 + 26197 0.69 0.651612
Target:  5'- cCGCGCGGCGGCCGcGCGauGCGGcgGc-- -3'
miRNA:   3'- -GCGUGCUGCCGGC-UGU--UGUUuaCcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.