miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 5' -53.9 NC_005263.2 + 35913 0.67 0.672261
Target:  5'- --gACGAGcugccgcaucgcuucAucGCGACaCGGCCGCGAu -3'
miRNA:   3'- agaUGCUC---------------UuuCGCUG-GCCGGCGUUc -5'
24319 5' -53.9 NC_005263.2 + 24539 0.68 0.645435
Target:  5'- -gUGCGGGuucGUGccuGCCGGCUGCGGGa -3'
miRNA:   3'- agAUGCUCuuuCGC---UGGCCGGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 35548 0.68 0.645435
Target:  5'- --cGCGGGcgGGCGcuacggcgccGCCGGCCGCc-- -3'
miRNA:   3'- agaUGCUCuuUCGC----------UGGCCGGCGuuc -5'
24319 5' -53.9 NC_005263.2 + 17340 0.68 0.634227
Target:  5'- --cGCGAGGAAGuCGugCGuGUCGaCAAGg -3'
miRNA:   3'- agaUGCUCUUUC-GCugGC-CGGC-GUUC- -5'
24319 5' -53.9 NC_005263.2 + 30400 0.68 0.623017
Target:  5'- gCUuCG-GAuagcGCGACCGGCUGCAGc -3'
miRNA:   3'- aGAuGCuCUuu--CGCUGGCCGGCGUUc -5'
24319 5' -53.9 NC_005263.2 + 3802 0.68 0.611816
Target:  5'- aUCUGCGAGGcGAGCG-CCGGaUCGaaCAGGg -3'
miRNA:   3'- -AGAUGCUCU-UUCGCuGGCC-GGC--GUUC- -5'
24319 5' -53.9 NC_005263.2 + 42011 0.68 0.611816
Target:  5'- -gUGCcGGcaguGCGGCCGGCCGCGc- -3'
miRNA:   3'- agAUGcUCuuu-CGCUGGCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 45235 0.69 0.605104
Target:  5'- gUCaGCGAGAucgucuacaacuggcGGGCgGGCCGGcCCGCAu- -3'
miRNA:   3'- -AGaUGCUCU---------------UUCG-CUGGCC-GGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 47309 0.69 0.600633
Target:  5'- cCUGCGcc--GGCGGCCGGCaCGCucAAGg -3'
miRNA:   3'- aGAUGCucuuUCGCUGGCCG-GCG--UUC- -5'
24319 5' -53.9 NC_005263.2 + 35733 0.69 0.578361
Target:  5'- --gGCGAGAcgccggaagAAGCGGCgCGG-CGCGAGa -3'
miRNA:   3'- agaUGCUCU---------UUCGCUG-GCCgGCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 17206 0.69 0.556272
Target:  5'- --gAUGGGAcAAGCuGGCCGGCaGCAAGa -3'
miRNA:   3'- agaUGCUCU-UUCG-CUGGCCGgCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 34319 0.69 0.545318
Target:  5'- cCUGgGGcGAAGCGAUCGGCgGCAc- -3'
miRNA:   3'- aGAUgCUcUUUCGCUGGCCGgCGUuc -5'
24319 5' -53.9 NC_005263.2 + 33994 0.7 0.534433
Target:  5'- gCUACGAucgcGAcGGCGACCG-CCGCGc- -3'
miRNA:   3'- aGAUGCU----CUuUCGCUGGCcGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 15381 0.7 0.502276
Target:  5'- gCUGuCGGGu-AGCGAcCCGGCCGCc-- -3'
miRNA:   3'- aGAU-GCUCuuUCGCU-GGCCGGCGuuc -5'
24319 5' -53.9 NC_005263.2 + 14165 0.7 0.491743
Target:  5'- aCUuCGGGccGGCGGCCGGUgugCGCGAGc -3'
miRNA:   3'- aGAuGCUCuuUCGCUGGCCG---GCGUUC- -5'
24319 5' -53.9 NC_005263.2 + 6090 0.71 0.481314
Target:  5'- cCUugGc----GCGGCCGGCCGCAc- -3'
miRNA:   3'- aGAugCucuuuCGCUGGCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 16348 0.71 0.460786
Target:  5'- uUCgACGAGAcgAAGCG-CgCGGCCGCGu- -3'
miRNA:   3'- -AGaUGCUCU--UUCGCuG-GCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 9379 0.71 0.460786
Target:  5'- gCUGCGGGAAuuucagcgcGGCGGCCaGCUGCu-- -3'
miRNA:   3'- aGAUGCUCUU---------UCGCUGGcCGGCGuuc -5'
24319 5' -53.9 NC_005263.2 + 30334 0.71 0.460786
Target:  5'- aUUUGCGAGAAGcGCGugccgaGCgCGGCCGCGc- -3'
miRNA:   3'- -AGAUGCUCUUU-CGC------UG-GCCGGCGUuc -5'
24319 5' -53.9 NC_005263.2 + 14551 0.71 0.44073
Target:  5'- cCUGa-AGGAAGCGcuuaGCCGGCCGCGu- -3'
miRNA:   3'- aGAUgcUCUUUCGC----UGGCCGGCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.