miRNA display CGI


Results 41 - 60 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 26279 0.67 0.613469
Target:  5'- -aGCCUGAacgccCGCGagAAUGGCuUGCUc -3'
miRNA:   3'- cgCGGACUa----GCGCagUUACCGcACGG- -5'
24320 3' -55.2 NC_005263.2 + 26924 0.73 0.288036
Target:  5'- cGCGCC-GcgCGCGUCcgcguccgccccGUGGCGUaGCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGu-----------UACCGCA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 27008 0.66 0.679728
Target:  5'- gGCGUCaUGGUCa-GUUGugcGGCGUGCCg -3'
miRNA:   3'- -CGCGG-ACUAGcgCAGUua-CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 27248 0.67 0.602425
Target:  5'- aGCGCCguugcGAcgcUCGCGUCGAauuggcccgacUGcGCGagGCCg -3'
miRNA:   3'- -CGCGGa----CU---AGCGCAGUU-----------AC-CGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 28103 0.73 0.288764
Target:  5'- cGCgGCC-GAUCGCGUCGuugacggcaGUGGCGccgucuugcacgcUGCCa -3'
miRNA:   3'- -CG-CGGaCUAGCGCAGU---------UACCGC-------------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 29356 0.66 0.668736
Target:  5'- cGCGCCgccuacGAUCGCGcCGAucUGGCGcuUGaCUc -3'
miRNA:   3'- -CGCGGa-----CUAGCGCaGUU--ACCGC--AC-GG- -5'
24320 3' -55.2 NC_005263.2 + 29698 0.69 0.494766
Target:  5'- gGCGUCagGAUCGUGcgCAcccGCGUGCCg -3'
miRNA:   3'- -CGCGGa-CUAGCGCa-GUuacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 29723 0.7 0.444222
Target:  5'- -gGCC--GUCGCGUCGcUGGC-UGCCu -3'
miRNA:   3'- cgCGGacUAGCGCAGUuACCGcACGG- -5'
24320 3' -55.2 NC_005263.2 + 29758 0.68 0.558596
Target:  5'- uGCGCCgGGUucUGCGgguUCAGcaGCGUGCCg -3'
miRNA:   3'- -CGCGGaCUA--GCGC---AGUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 30322 0.69 0.537005
Target:  5'- uGCGCCUcGAaaauUUGCGagAAgcGCGUGCCg -3'
miRNA:   3'- -CGCGGA-CU----AGCGCagUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 30473 0.66 0.712383
Target:  5'- aGCGCCgacgGAaCGCaUCGAUGcGCGacccgcGCCa -3'
miRNA:   3'- -CGCGGa---CUaGCGcAGUUAC-CGCa-----CGG- -5'
24320 3' -55.2 NC_005263.2 + 30793 0.7 0.474216
Target:  5'- gGCGCCgggccGAauUCGCGcgCcGUGGCGacUGCCu -3'
miRNA:   3'- -CGCGGa----CU--AGCGCa-GuUACCGC--ACGG- -5'
24320 3' -55.2 NC_005263.2 + 31003 0.69 0.537005
Target:  5'- aCGCCaGAUCGUGcagCAGUgcggcgaggcgcGGCGUGCg -3'
miRNA:   3'- cGCGGaCUAGCGCa--GUUA------------CCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 31482 0.69 0.484439
Target:  5'- gGCGCCUGGcC-CGUCAGcGGCGcgagcUGCUg -3'
miRNA:   3'- -CGCGGACUaGcGCAGUUaCCGC-----ACGG- -5'
24320 3' -55.2 NC_005263.2 + 34103 0.68 0.590307
Target:  5'- uGCGCCUcg-CGCGUCAguucgaaGUGGaCGUGa- -3'
miRNA:   3'- -CGCGGAcuaGCGCAGU-------UACC-GCACgg -5'
24320 3' -55.2 NC_005263.2 + 34352 0.69 0.505192
Target:  5'- cGCGCCUGucgcCGUGUaaaccGGCaGUGCCc -3'
miRNA:   3'- -CGCGGACua--GCGCAguua-CCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 34715 0.66 0.690674
Target:  5'- cGCGCCUgcacacGAUCGUGUCccggccGGUaGGCGacaUGCUc -3'
miRNA:   3'- -CGCGGA------CUAGCGCAG------UUA-CCGC---ACGG- -5'
24320 3' -55.2 NC_005263.2 + 35351 0.66 0.701563
Target:  5'- uGgGCCUGGUCG-GUC-GUGaGCGcagacgucgcagUGCCa -3'
miRNA:   3'- -CgCGGACUAGCgCAGuUAC-CGC------------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 35501 0.73 0.289494
Target:  5'- aGCGUC--GUCGCgGUCAGUGGCcccguaaguGUGCCg -3'
miRNA:   3'- -CGCGGacUAGCG-CAGUUACCG---------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 35980 0.72 0.361132
Target:  5'- cCGCCUGGagCGCGcgUAAUGGCGcgcgcGCCg -3'
miRNA:   3'- cGCGGACUa-GCGCa-GUUACCGCa----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.