miRNA display CGI


Results 41 - 60 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 42126 0.67 0.624529
Target:  5'- aGCGUCgUGcugCGCGaCGA-GGCGUGUCg -3'
miRNA:   3'- -CGCGG-ACua-GCGCaGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 3523 0.67 0.624529
Target:  5'- uGCGgCUGAUCgGCGUaaaGcgGGaucagcgcaGUGCCg -3'
miRNA:   3'- -CGCgGACUAG-CGCAg--UuaCCg--------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 27008 0.66 0.679728
Target:  5'- gGCGUCaUGGUCa-GUUGugcGGCGUGCCg -3'
miRNA:   3'- -CGCGG-ACUAGcgCAGUua-CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 43135 0.71 0.414379
Target:  5'- cGUGCCUGGagCGCGccggaacUCAGucgucgcgcUGGCGUGCg -3'
miRNA:   3'- -CGCGGACUa-GCGC-------AGUU---------ACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 11496 0.66 0.716689
Target:  5'- uGCGCCgucgccuuguugcacUGGUCGCGcgCGAUgaaGGCG-GCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCa-GUUA---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 30473 0.66 0.712383
Target:  5'- aGCGCCgacgGAaCGCaUCGAUGcGCGacccgcGCCa -3'
miRNA:   3'- -CGCGGa---CUaGCGcAGUUAC-CGCa-----CGG- -5'
24320 3' -55.2 NC_005263.2 + 9657 0.66 0.673138
Target:  5'- aGCGUCUcGAUCGcCGUCuugaccguggccGGCGUcacGCCg -3'
miRNA:   3'- -CGCGGA-CUAGC-GCAGuua---------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 26924 0.73 0.288036
Target:  5'- cGCGCC-GcgCGCGUCcgcguccgccccGUGGCGUaGCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGu-----------UACCGCA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 34715 0.66 0.690674
Target:  5'- cGCGCCUgcacacGAUCGUGUCccggccGGUaGGCGacaUGCUc -3'
miRNA:   3'- -CGCGGA------CUAGCGCAG------UUA-CCGC---ACGG- -5'
24320 3' -55.2 NC_005263.2 + 46816 0.67 0.654397
Target:  5'- aCGCC-GAUCGCGUaacgcaacgcgcgcCAGgcGGCGcGCCa -3'
miRNA:   3'- cGCGGaCUAGCGCA--------------GUUa-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 18907 0.67 0.613469
Target:  5'- cGCGCCgGccUGCGUCGA--GCGUGaCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGUUacCGCAC-GG- -5'
24320 3' -55.2 NC_005263.2 + 36100 0.73 0.327839
Target:  5'- cGCGCC--GUCGCGUUGAUGGcCGcGUCg -3'
miRNA:   3'- -CGCGGacUAGCGCAGUUACC-GCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 8361 0.72 0.344196
Target:  5'- uUGCCgaGGUCGCuugucGUCAGUGGCGcaggcagGCCg -3'
miRNA:   3'- cGCGGa-CUAGCG-----CAGUUACCGCa------CGG- -5'
24320 3' -55.2 NC_005263.2 + 35980 0.72 0.361132
Target:  5'- cCGCCUGGagCGCGcgUAAUGGCGcgcgcGCCg -3'
miRNA:   3'- cGCGGACUa-GCGCa-GUUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 6651 0.71 0.424828
Target:  5'- aGCGCCUGcUCGa-UCAuAUGcGCGUGCUc -3'
miRNA:   3'- -CGCGGACuAGCgcAGU-UAC-CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 14216 0.7 0.463098
Target:  5'- cGUGCCgu-UCGCGcgCAacgaauccgacccGUGGCGUGCg -3'
miRNA:   3'- -CGCGGacuAGCGCa-GU-------------UACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 29698 0.69 0.494766
Target:  5'- gGCGUCagGAUCGUGcgCAcccGCGUGCCg -3'
miRNA:   3'- -CGCGGa-CUAGCGCa-GUuacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 19401 0.67 0.600219
Target:  5'- cGCGCaguacggcaacGcgCGCGUUGAgguguucGGCGUGCCg -3'
miRNA:   3'- -CGCGga---------CuaGCGCAGUUa------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 27248 0.67 0.602425
Target:  5'- aGCGCCguugcGAcgcUCGCGUCGAauuggcccgacUGcGCGagGCCg -3'
miRNA:   3'- -CGCGGa----CU---AGCGCAGUU-----------AC-CGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 41505 0.67 0.602425
Target:  5'- cGCGCCgccgaacgcGAUCGCGUCGAcuacuUGcGCcUGCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCAGUU-----AC-CGcACGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.