miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 16644 0.68 0.591407
Target:  5'- gGCGCC-GAacuugcaggcgcUCGCGUCGuucGGCGUGa- -3'
miRNA:   3'- -CGCGGaCU------------AGCGCAGUua-CCGCACgg -5'
24320 3' -55.2 NC_005263.2 + 34103 0.68 0.590307
Target:  5'- uGCGCCUcg-CGCGUCAguucgaaGUGGaCGUGa- -3'
miRNA:   3'- -CGCGGAcuaGCGCAGU-------UACC-GCACgg -5'
24320 3' -55.2 NC_005263.2 + 26924 0.73 0.288036
Target:  5'- cGCGCC-GcgCGCGUCcgcguccgccccGUGGCGUaGCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGu-----------UACCGCA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 36100 0.73 0.327839
Target:  5'- cGCGCC--GUCGCGUUGAUGGcCGcGUCg -3'
miRNA:   3'- -CGCGGacUAGCGCAGUUACC-GCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 28103 0.73 0.288764
Target:  5'- cGCgGCC-GAUCGCGUCGuugacggcaGUGGCGccgucuugcacgcUGCCa -3'
miRNA:   3'- -CG-CGGaCUAGCGCAGU---------UACCGC-------------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 8361 0.72 0.344196
Target:  5'- uUGCCgaGGUCGCuugucGUCAGUGGCGcaggcagGCCg -3'
miRNA:   3'- cGCGGa-CUAGCG-----CAGUUACCGCa------CGG- -5'
24320 3' -55.2 NC_005263.2 + 35980 0.72 0.361132
Target:  5'- cCGCCUGGagCGCGcgUAAUGGCGcgcgcGCCg -3'
miRNA:   3'- cGCGGACUa-GCGCa-GUUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 6651 0.71 0.424828
Target:  5'- aGCGCCUGcUCGa-UCAuAUGcGCGUGCUc -3'
miRNA:   3'- -CGCGGACuAGCgcAGU-UAC-CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 14216 0.7 0.463098
Target:  5'- cGUGCCgu-UCGCGcgCAacgaauccgacccGUGGCGUGCg -3'
miRNA:   3'- -CGCGGacuAGCGCa-GU-------------UACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 29698 0.69 0.494766
Target:  5'- gGCGUCagGAUCGUGcgCAcccGCGUGCCg -3'
miRNA:   3'- -CGCGGa-CUAGCGCa-GUuacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 25762 0.69 0.498924
Target:  5'- cCGCgUGAUCuGCGUCGAgaaGcagcccgcgcgcugaGCGUGCCg -3'
miRNA:   3'- cGCGgACUAG-CGCAGUUa--C---------------CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 17489 0.69 0.525253
Target:  5'- cGC-CCUGAUCGCGcgcggcgcgucgaUCGAUcaGGCGgcgGCUa -3'
miRNA:   3'- -CGcGGACUAGCGC-------------AGUUA--CCGCa--CGG- -5'
24320 3' -55.2 NC_005263.2 + 40900 0.69 0.537005
Target:  5'- uCGCCUGAUCGCuggaaaGGCGcaGCCg -3'
miRNA:   3'- cGCGGACUAGCGcaguuaCCGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 10914 0.68 0.552091
Target:  5'- cGCGCUgggggaugccgcacgUGAUCGCGUCGugcggGGUGaGCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCAGUua---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 29758 0.68 0.558596
Target:  5'- uGCGCCgGGUucUGCGgguUCAGcaGCGUGCCg -3'
miRNA:   3'- -CGCGGaCUA--GCGC---AGUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 9135 0.68 0.568393
Target:  5'- uUGCC-GGUCGCGUCGugguucgucucauGcuuguUGGCcGUGCCg -3'
miRNA:   3'- cGCGGaCUAGCGCAGU-------------U-----ACCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 19078 0.66 0.712383
Target:  5'- cGCGCgCUGGU-GCGUCuugcagGGCuG-GCCg -3'
miRNA:   3'- -CGCG-GACUAgCGCAGuua---CCG-CaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.