miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 24761 0.66 0.690674
Target:  5'- cGgGCCUGcuacuGUCGC-UCAcgGGCG-GCg -3'
miRNA:   3'- -CgCGGAC-----UAGCGcAGUuaCCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 39724 0.67 0.65771
Target:  5'- gGCGCg-GGcCGCGUCGAccUGGCGaGCg -3'
miRNA:   3'- -CGCGgaCUaGCGCAGUU--ACCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 9657 0.66 0.673138
Target:  5'- aGCGUCUcGAUCGcCGUCuugaccguggccGGCGUcacGCCg -3'
miRNA:   3'- -CGCGGA-CUAGC-GCAGuua---------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 46816 0.67 0.654397
Target:  5'- aCGCC-GAUCGCGUaacgcaacgcgcgcCAGgcGGCGcGCCa -3'
miRNA:   3'- cGCGGaCUAGCGCA--------------GUUa-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 19625 0.67 0.64666
Target:  5'- aCGCCUcGUaCGCGUUGAUGGCugaagugauGUcGCCg -3'
miRNA:   3'- cGCGGAcUA-GCGCAGUUACCG---------CA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 27248 0.67 0.602425
Target:  5'- aGCGCCguugcGAcgcUCGCGUCGAauuggcccgacUGcGCGagGCCg -3'
miRNA:   3'- -CGCGGa----CU---AGCGCAGUU-----------AC-CGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 41505 0.67 0.602425
Target:  5'- cGCGCCgccgaacgcGAUCGCGUCGAcuacuUGcGCcUGCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCAGUU-----AC-CGcACGg -5'
24320 3' -55.2 NC_005263.2 + 18907 0.67 0.613469
Target:  5'- cGCGCCgGccUGCGUCGA--GCGUGaCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGUUacCGCAC-GG- -5'
24320 3' -55.2 NC_005263.2 + 16769 0.67 0.613469
Target:  5'- cGCGCCUGA-CG-GcCGccGGCGUaucGCCg -3'
miRNA:   3'- -CGCGGACUaGCgCaGUuaCCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 45778 0.67 0.623423
Target:  5'- cCGCacggUGcUCGCGUuccgccaguucaaCGcgGGCGUGCCg -3'
miRNA:   3'- cGCGg---ACuAGCGCA-------------GUuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 44006 0.67 0.624529
Target:  5'- aCGaCCUG-UCGCGUCcgcucggcaagGGUGGCGacuucGCCg -3'
miRNA:   3'- cGC-GGACuAGCGCAG-----------UUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 29723 0.7 0.444222
Target:  5'- -gGCC--GUCGCGUCGcUGGC-UGCCu -3'
miRNA:   3'- cgCGGacUAGCGCAGUuACCGcACGG- -5'
24320 3' -55.2 NC_005263.2 + 3914 0.71 0.415322
Target:  5'- aGCGCCgg---GCGgCAAUGGCGgcagGCCg -3'
miRNA:   3'- -CGCGGacuagCGCaGUUACCGCa---CGG- -5'
24320 3' -55.2 NC_005263.2 + 43135 0.71 0.414379
Target:  5'- cGUGCCUGGagCGCGccggaacUCAGucgucgcgcUGGCGUGCg -3'
miRNA:   3'- -CGCGGACUa-GCGC-------AGUU---------ACCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 2677 0.71 0.396708
Target:  5'- gGCaGCCUGcaguGUCGCGcCGGcGGCG-GCCg -3'
miRNA:   3'- -CG-CGGAC----UAGCGCaGUUaCCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 12675 0.72 0.352592
Target:  5'- cGCGCCgGGgucgucguUCGCGUCGAgcuugccGGCGUagggGCCg -3'
miRNA:   3'- -CGCGGaCU--------AGCGCAGUUa------CCGCA----CGG- -5'
24320 3' -55.2 NC_005263.2 + 7036 0.73 0.303636
Target:  5'- cGCGCCgacgGAuggcgcaUCGCGcCAAUGGCagGUGCg -3'
miRNA:   3'- -CGCGGa---CU-------AGCGCaGUUACCG--CACGg -5'
24320 3' -55.2 NC_005263.2 + 35501 0.73 0.289494
Target:  5'- aGCGUC--GUCGCgGUCAGUGGCcccguaaguGUGCCg -3'
miRNA:   3'- -CGCGGacUAGCG-CAGUUACCG---------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 20990 0.75 0.235605
Target:  5'- cGCGCCUG--CGCGUCGA---CGUGCCg -3'
miRNA:   3'- -CGCGGACuaGCGCAGUUaccGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 11496 0.66 0.716689
Target:  5'- uGCGCCgucgccuuguugcacUGGUCGCGcgCGAUgaaGGCG-GCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCa-GUUA---CCGCaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.