miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 42052 0.67 0.644448
Target:  5'- cGCGCgUGAagCGCGcCGccaacgaacggGGCGUGCUc -3'
miRNA:   3'- -CGCGgACUa-GCGCaGUua---------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 42126 0.67 0.624529
Target:  5'- aGCGUCgUGcugCGCGaCGA-GGCGUGUCg -3'
miRNA:   3'- -CGCGG-ACua-GCGCaGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 3523 0.67 0.624529
Target:  5'- uGCGgCUGAUCgGCGUaaaGcgGGaucagcgcaGUGCCg -3'
miRNA:   3'- -CGCgGACUAG-CGCAg--UuaCCg--------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 44006 0.67 0.624529
Target:  5'- aCGaCCUG-UCGCGUCcgcucggcaagGGUGGCGacuucGCCg -3'
miRNA:   3'- cGC-GGACuAGCGCAG-----------UUACCGCa----CGG- -5'
24320 3' -55.2 NC_005263.2 + 45778 0.67 0.623423
Target:  5'- cCGCacggUGcUCGCGUuccgccaguucaaCGcgGGCGUGCCg -3'
miRNA:   3'- cGCGg---ACuAGCGCA-------------GUuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 23777 0.67 0.613469
Target:  5'- cGCGCCguuUUGCGgaauugCGAUGccCGUGCCg -3'
miRNA:   3'- -CGCGGacuAGCGCa-----GUUACc-GCACGG- -5'
24320 3' -55.2 NC_005263.2 + 18907 0.67 0.613469
Target:  5'- cGCGCCgGccUGCGUCGA--GCGUGaCCg -3'
miRNA:   3'- -CGCGGaCuaGCGCAGUUacCGCAC-GG- -5'
24320 3' -55.2 NC_005263.2 + 26279 0.67 0.613469
Target:  5'- -aGCCUGAacgccCGCGagAAUGGCuUGCUc -3'
miRNA:   3'- cgCGGACUa----GCGCagUUACCGcACGG- -5'
24320 3' -55.2 NC_005263.2 + 16769 0.67 0.613469
Target:  5'- cGCGCCUGA-CG-GcCGccGGCGUaucGCCg -3'
miRNA:   3'- -CGCGGACUaGCgCaGUuaCCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 41505 0.67 0.602425
Target:  5'- cGCGCCgccgaacgcGAUCGCGUCGAcuacuUGcGCcUGCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCAGUU-----AC-CGcACGg -5'
24320 3' -55.2 NC_005263.2 + 27248 0.67 0.602425
Target:  5'- aGCGCCguugcGAcgcUCGCGUCGAauuggcccgacUGcGCGagGCCg -3'
miRNA:   3'- -CGCGGa----CU---AGCGCAGUU-----------AC-CGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 11237 0.67 0.602425
Target:  5'- cGCGCCcgGGUCGaauucUCGAccgccgGGCGUGCg -3'
miRNA:   3'- -CGCGGa-CUAGCgc---AGUUa-----CCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 19401 0.67 0.600219
Target:  5'- cGCGCaguacggcaacGcgCGCGUUGAgguguucGGCGUGCCg -3'
miRNA:   3'- -CGCGga---------CuaGCGCAGUUa------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 38408 0.68 0.591407
Target:  5'- aCGCaCUGucgCGCGUCGGgugcgccGGCGUgacGCCg -3'
miRNA:   3'- cGCG-GACua-GCGCAGUUa------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 16644 0.68 0.591407
Target:  5'- gGCGCC-GAacuugcaggcgcUCGCGUCGuucGGCGUGa- -3'
miRNA:   3'- -CGCGGaCU------------AGCGCAGUua-CCGCACgg -5'
24320 3' -55.2 NC_005263.2 + 19033 0.68 0.591407
Target:  5'- cGCGCCU-AUCGCGcCGua-GCGgGCCg -3'
miRNA:   3'- -CGCGGAcUAGCGCaGUuacCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 4947 0.68 0.591407
Target:  5'- uGCGUCUGGUUguaccaggGCG-CAAUGGCcgaGCCu -3'
miRNA:   3'- -CGCGGACUAG--------CGCaGUUACCGca-CGG- -5'
24320 3' -55.2 NC_005263.2 + 34103 0.68 0.590307
Target:  5'- uGCGCCUcg-CGCGUCAguucgaaGUGGaCGUGa- -3'
miRNA:   3'- -CGCGGAcuaGCGCAGU-------UACC-GCACgg -5'
24320 3' -55.2 NC_005263.2 + 24825 0.68 0.569484
Target:  5'- gGCGCCUGuccccaggGCuUCcacGGCGUGCCg -3'
miRNA:   3'- -CGCGGACuag-----CGcAGuuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 9135 0.68 0.568393
Target:  5'- uUGCC-GGUCGCGUCGugguucgucucauGcuuguUGGCcGUGCCg -3'
miRNA:   3'- cGCGGaCUAGCGCAGU-------------U-----ACCG-CACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.