miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24321 5' -62 NC_005263.2 + 2692 0.66 0.331183
Target:  5'- cGCGCCGGCggcGGCCgACagaCCGAGUuCg- -3'
miRNA:   3'- -UGCGGCCGa--CUGG-UGg--GGCUCGuGaa -5'
24321 5' -62 NC_005263.2 + 38918 0.66 0.323371
Target:  5'- -aGCCGGC--GCCGCgCCGAGCuCg- -3'
miRNA:   3'- ugCGGCCGacUGGUGgGGCUCGuGaa -5'
24321 5' -62 NC_005263.2 + 30360 0.66 0.315697
Target:  5'- -gGCCGcGCUG-CCGCCggcgCCGAGUGCg- -3'
miRNA:   3'- ugCGGC-CGACuGGUGG----GGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 20378 0.66 0.308161
Target:  5'- uUGCCGGCgUGAUUGCCucgaCCGAGCAa-- -3'
miRNA:   3'- uGCGGCCG-ACUGGUGG----GGCUCGUgaa -5'
24321 5' -62 NC_005263.2 + 20733 0.66 0.300764
Target:  5'- cGCGCCGGCcGccGCCGCgCCGcuCGCUg -3'
miRNA:   3'- -UGCGGCCGaC--UGGUGgGGCucGUGAa -5'
24321 5' -62 NC_005263.2 + 29656 0.66 0.300764
Target:  5'- cCGCgCGGCUGcuucacGCgCACCUCGAGCGgUUc -3'
miRNA:   3'- uGCG-GCCGAC------UG-GUGGGGCUCGUgAA- -5'
24321 5' -62 NC_005263.2 + 44685 0.66 0.293504
Target:  5'- -aGUCGGC-GGCCAUCCUGcGCGCa- -3'
miRNA:   3'- ugCGGCCGaCUGGUGGGGCuCGUGaa -5'
24321 5' -62 NC_005263.2 + 10945 0.67 0.286382
Target:  5'- gUGCgGGgUGAgCGCUUCGAGCACa- -3'
miRNA:   3'- uGCGgCCgACUgGUGGGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 22408 0.67 0.279396
Target:  5'- gGCGCCcaGGUUGGCgACCgucaagaCGAGCACg- -3'
miRNA:   3'- -UGCGG--CCGACUGgUGGg------GCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 19032 0.67 0.279396
Target:  5'- aGCGaCGGCcgaUGcgcGCCGCCCCGAGgACg- -3'
miRNA:   3'- -UGCgGCCG---AC---UGGUGGGGCUCgUGaa -5'
24321 5' -62 NC_005263.2 + 9491 0.67 0.265833
Target:  5'- cGCGCCGGCgcuauCCAUCgCGuGCGCg- -3'
miRNA:   3'- -UGCGGCCGacu--GGUGGgGCuCGUGaa -5'
24321 5' -62 NC_005263.2 + 38548 0.67 0.265833
Target:  5'- cGCGCCGcCUGGCaaGCCgCGAGCGCc- -3'
miRNA:   3'- -UGCGGCcGACUGg-UGGgGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 20190 0.67 0.259254
Target:  5'- cGCGCCgGGCgacgcGCCGCCgUCGAGUGCUUu -3'
miRNA:   3'- -UGCGG-CCGac---UGGUGG-GGCUCGUGAA- -5'
24321 5' -62 NC_005263.2 + 16093 0.67 0.259254
Target:  5'- -gGCCGGCUGuuCACCCgCGcAGCuACg- -3'
miRNA:   3'- ugCGGCCGACugGUGGG-GC-UCG-UGaa -5'
24321 5' -62 NC_005263.2 + 23259 0.67 0.259254
Target:  5'- cCGCCGGCUGGCgCACC---GGCACc- -3'
miRNA:   3'- uGCGGCCGACUG-GUGGggcUCGUGaa -5'
24321 5' -62 NC_005263.2 + 1368 0.67 0.259254
Target:  5'- uUGCCGGC-GGCgGCCUugaaCGAGCGCa- -3'
miRNA:   3'- uGCGGCCGaCUGgUGGG----GCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 24073 0.67 0.252808
Target:  5'- -gGCCGuGCUGAUCcaGCUgCCGAGCGCg- -3'
miRNA:   3'- ugCGGC-CGACUGG--UGG-GGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 29152 0.67 0.252808
Target:  5'- gUGCCGGCUGcgcucguaACCggcGCgCUCGAGCGCUc -3'
miRNA:   3'- uGCGGCCGAC--------UGG---UG-GGGCUCGUGAa -5'
24321 5' -62 NC_005263.2 + 26828 0.68 0.246495
Target:  5'- gGCGCCca-UGACCugCCCGAGCc--- -3'
miRNA:   3'- -UGCGGccgACUGGugGGGCUCGugaa -5'
24321 5' -62 NC_005263.2 + 35018 0.68 0.240313
Target:  5'- cACGCC-GCUGuCCgGCCUCGAcGCACUg -3'
miRNA:   3'- -UGCGGcCGACuGG-UGGGGCU-CGUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.