miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24321 5' -62 NC_005263.2 + 38918 0.66 0.323371
Target:  5'- -aGCCGGC--GCCGCgCCGAGCuCg- -3'
miRNA:   3'- ugCGGCCGacUGGUGgGGCUCGuGaa -5'
24321 5' -62 NC_005263.2 + 47924 0.72 0.113983
Target:  5'- gGCGCacgGGCagcgGGCuCGCCCCGGGCGCg- -3'
miRNA:   3'- -UGCGg--CCGa---CUG-GUGGGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 18907 0.71 0.138055
Target:  5'- cGCGCCGGCcugcgucgagcgUGACCGCgcggcacgagcgCUCGAGCGCg- -3'
miRNA:   3'- -UGCGGCCG------------ACUGGUG------------GGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 34373 0.7 0.153829
Target:  5'- cCGCCGGCgGuaaCGCCgCGAGCACg- -3'
miRNA:   3'- uGCGGCCGaCug-GUGGgGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 17751 0.7 0.175834
Target:  5'- gGCGCCGGCggcagcgcGGCCGCgCUCG-GCACg- -3'
miRNA:   3'- -UGCGGCCGa-------CUGGUG-GGGCuCGUGaa -5'
24321 5' -62 NC_005263.2 + 41478 0.7 0.175834
Target:  5'- gACGCgCGacuGCUcGACCGCgCCGAGCGCg- -3'
miRNA:   3'- -UGCG-GC---CGA-CUGGUGgGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 35418 0.7 0.181037
Target:  5'- uACGCCGGCaagcucgacgcgaacGACgACCCCG-GCGCg- -3'
miRNA:   3'- -UGCGGCCGa--------------CUGgUGGGGCuCGUGaa -5'
24321 5' -62 NC_005263.2 + 35957 0.69 0.211324
Target:  5'- gACGCUgcgugcaaGGCgcucGACCGCCUgGAGCGCg- -3'
miRNA:   3'- -UGCGG--------CCGa---CUGGUGGGgCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 24989 0.68 0.222541
Target:  5'- -gGCCGGcCUGGCCGCaaCCGGGUAUg- -3'
miRNA:   3'- ugCGGCC-GACUGGUGg-GGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 28131 0.68 0.222541
Target:  5'- gGCGCCGucuugcacGCUG-CCAgCgCCGAGCACg- -3'
miRNA:   3'- -UGCGGC--------CGACuGGUgG-GGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 10945 0.67 0.286382
Target:  5'- gUGCgGGgUGAgCGCUUCGAGCACa- -3'
miRNA:   3'- uGCGgCCgACUgGUGGGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 19032 0.67 0.279396
Target:  5'- aGCGaCGGCcgaUGcgcGCCGCCCCGAGgACg- -3'
miRNA:   3'- -UGCgGCCG---AC---UGGUGGGGCUCgUGaa -5'
24321 5' -62 NC_005263.2 + 38548 0.67 0.265833
Target:  5'- cGCGCCGcCUGGCaaGCCgCGAGCGCc- -3'
miRNA:   3'- -UGCGGCcGACUGg-UGGgGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 16093 0.67 0.259254
Target:  5'- -gGCCGGCUGuuCACCCgCGcAGCuACg- -3'
miRNA:   3'- ugCGGCCGACugGUGGG-GC-UCG-UGaa -5'
24321 5' -62 NC_005263.2 + 26828 0.68 0.246495
Target:  5'- gGCGCCca-UGACCugCCCGAGCc--- -3'
miRNA:   3'- -UGCGGccgACUGGugGGGCUCGugaa -5'
24321 5' -62 NC_005263.2 + 35018 0.68 0.240313
Target:  5'- cACGCC-GCUGuCCgGCCUCGAcGCACUg -3'
miRNA:   3'- -UGCGGcCGACuGG-UGGGGCU-CGUGAa -5'
24321 5' -62 NC_005263.2 + 15327 0.68 0.228337
Target:  5'- gGCGCgGGCcGACaccgagaACCCCGAcgcgGCGCUg -3'
miRNA:   3'- -UGCGgCCGaCUGg------UGGGGCU----CGUGAa -5'
24321 5' -62 NC_005263.2 + 2692 0.66 0.331183
Target:  5'- cGCGCCGGCggcGGCCgACagaCCGAGUuCg- -3'
miRNA:   3'- -UGCGGCCGa--CUGG-UGg--GGCUCGuGaa -5'
24321 5' -62 NC_005263.2 + 19111 0.77 0.051891
Target:  5'- cUGCCGGUcGGCCGCgCCGAGCGCa- -3'
miRNA:   3'- uGCGGCCGaCUGGUGgGGCUCGUGaa -5'
24321 5' -62 NC_005263.2 + 18046 0.7 0.180559
Target:  5'- uCGCCGGCUacgaaGCCAUCCUGAcGCACc- -3'
miRNA:   3'- uGCGGCCGAc----UGGUGGGGCU-CGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.