miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 30620 0.67 0.267292
Target:  5'- aCGCg--CCGCGCGCGAucaGGGCGUuCa -3'
miRNA:   3'- -GCGacgGGCGCGCGCUcg-UCCGCAuG- -5'
24322 3' -62.6 NC_005263.2 + 41476 0.67 0.260755
Target:  5'- gCGCUGCUcgaCGCGgGCGAGUcGGcCGUc- -3'
miRNA:   3'- -GCGACGG---GCGCgCGCUCGuCC-GCAug -5'
24322 3' -62.6 NC_005263.2 + 19963 0.67 0.254348
Target:  5'- uCGCgUGCUCG-GCGCuGGCAG-CGUGCa -3'
miRNA:   3'- -GCG-ACGGGCgCGCGcUCGUCcGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 12509 0.67 0.248072
Target:  5'- gCGC-GCCgGCuucGCGCGGGUuGGCGUucGCa -3'
miRNA:   3'- -GCGaCGGgCG---CGCGCUCGuCCGCA--UG- -5'
24322 3' -62.6 NC_005263.2 + 31387 0.67 0.248072
Target:  5'- gGCUGCUCGCGCG---GUAGGUGcGCu -3'
miRNA:   3'- gCGACGGGCGCGCgcuCGUCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 30520 0.67 0.248072
Target:  5'- uCGUgacCCCGCuGCGCGAGCAGcucgauGCGcUGCu -3'
miRNA:   3'- -GCGac-GGGCG-CGCGCUCGUC------CGC-AUG- -5'
24322 3' -62.6 NC_005263.2 + 8877 0.67 0.248072
Target:  5'- aCGCgGCCCGUGCuGcCGGuGCAGcGCGcGCa -3'
miRNA:   3'- -GCGaCGGGCGCG-C-GCU-CGUC-CGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 44810 0.67 0.248072
Target:  5'- gCGCcG-CCGCGCGCacaagGAGaaaGGGCGUAUg -3'
miRNA:   3'- -GCGaCgGGCGCGCG-----CUCg--UCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 23340 0.68 0.241924
Target:  5'- aCGCcGCCCGUGaGCGAcaguaGCAGGCccgACa -3'
miRNA:   3'- -GCGaCGGGCGCgCGCU-----CGUCCGca-UG- -5'
24322 3' -62.6 NC_005263.2 + 10382 0.68 0.241924
Target:  5'- aGCcGCCaCGCGCcgggccggccgGCGAGCGGGUccgGCg -3'
miRNA:   3'- gCGaCGG-GCGCG-----------CGCUCGUCCGca-UG- -5'
24322 3' -62.6 NC_005263.2 + 46672 0.68 0.241924
Target:  5'- cCGCgaaGCCuCGCGCGC-AGCcaAGGCG-GCg -3'
miRNA:   3'- -GCGa--CGG-GCGCGCGcUCG--UCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 24848 0.68 0.241924
Target:  5'- gCGgUGCCgGUGCGCcAGCcGGCGgcUACg -3'
miRNA:   3'- -GCgACGGgCGCGCGcUCGuCCGC--AUG- -5'
24322 3' -62.6 NC_005263.2 + 38032 0.68 0.23001
Target:  5'- gCGCUGCCCGCGuCGCucGGCuuccaGUGCg -3'
miRNA:   3'- -GCGACGGGCGC-GCGc-UCGuccg-CAUG- -5'
24322 3' -62.6 NC_005263.2 + 22343 0.68 0.226533
Target:  5'- gGCUGCUucucgacgcagaucaCGCGgGCGGaCAGGuCGUGCa -3'
miRNA:   3'- gCGACGG---------------GCGCgCGCUcGUCC-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 32711 0.68 0.22424
Target:  5'- uGCUGCCCGcCGUGCGGaucgccaauGCAa-CGUACg -3'
miRNA:   3'- gCGACGGGC-GCGCGCU---------CGUccGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 4663 0.68 0.218594
Target:  5'- gGCagGCCgGCGCGCGGGUcuuucgucAGGauCGUGCc -3'
miRNA:   3'- gCGa-CGGgCGCGCGCUCG--------UCC--GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 10882 0.68 0.218594
Target:  5'- gGCaccgGCgCGCGuCGUGAGC-GGCGUAUc -3'
miRNA:   3'- gCGa---CGgGCGC-GCGCUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 11391 0.68 0.21307
Target:  5'- uCGCgGCCUGCGCGCacguGGUucGGGCGcgGCu -3'
miRNA:   3'- -GCGaCGGGCGCGCGc---UCG--UCCGCa-UG- -5'
24322 3' -62.6 NC_005263.2 + 20092 0.68 0.21307
Target:  5'- cCGCUuauCCUGUcccugcugaagGCGCGGaugcGCAGGCGUACg -3'
miRNA:   3'- -GCGAc--GGGCG-----------CGCGCU----CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 19849 0.69 0.207666
Target:  5'- uCGCUGCa---GCGCGuGCAGGUGcGCg -3'
miRNA:   3'- -GCGACGggcgCGCGCuCGUCCGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.