Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24322 | 5' | -54.4 | NC_005263.2 | + | 14169 | 0.68 | 0.601236 |
Target: 5'- cGGGCcgGCGgc-CggUGUGCGCGaGCu -3' miRNA: 3'- -CCUGuaCGCauaGuuGCGCGCGC-CGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 32677 | 0.68 | 0.623526 |
Target: 5'- cGGCG-GCGaUGUCGACGUGCGuCaGCAg -3' miRNA: 3'- cCUGUaCGC-AUAGUUGCGCGC-GcCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 22172 | 0.68 | 0.634687 |
Target: 5'- cGACGUGaCGUA-CGAUGCGaCGacCGGCAa -3' miRNA: 3'- cCUGUAC-GCAUaGUUGCGC-GC--GCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 2712 | 0.68 | 0.634687 |
Target: 5'- aGGuGCAUGCG---CAGCGCGCGU-GCAu -3' miRNA: 3'- -CC-UGUACGCauaGUUGCGCGCGcCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 24782 | 0.68 | 0.623526 |
Target: 5'- cGGGCGgcgucgGCGgcUCGcCGgGCGuCGGCGg -3' miRNA: 3'- -CCUGUa-----CGCauAGUuGCgCGC-GCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 25417 | 0.68 | 0.612372 |
Target: 5'- aGACA-GCcauccUCGGCGCGUGCGGUg -3' miRNA: 3'- cCUGUaCGcau--AGUUGCGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 18449 | 0.68 | 0.612372 |
Target: 5'- cGAgGUGCGcgugaagCAGC-CGCGCGGCu -3' miRNA: 3'- cCUgUACGCaua----GUUGcGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 12850 | 0.68 | 0.612372 |
Target: 5'- cGGGCAgccCGUAUucgauggggcCGGCGUGCGUGGUg -3' miRNA: 3'- -CCUGUac-GCAUA----------GUUGCGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 41148 | 0.68 | 0.612372 |
Target: 5'- cGGAaaCcgGCGUucgcgCGGCGUGgGCGGCc -3' miRNA: 3'- -CCU--GuaCGCAua---GUUGCGCgCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 29977 | 0.68 | 0.601236 |
Target: 5'- cGGGCA-GCGcgAUCAGCGCGUagaacuCGGCc -3' miRNA: 3'- -CCUGUaCGCa-UAGUUGCGCGc-----GCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 43301 | 0.68 | 0.623526 |
Target: 5'- cGGGCG-GCGUAUgAgcgucACGCGaCGCGGg- -3' miRNA: 3'- -CCUGUaCGCAUAgU-----UGCGC-GCGCCgu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 859 | 0.68 | 0.579054 |
Target: 5'- cGGACA-GCGUacccGUCGugccggccgGCGCuucguucaGCGCGGCGg -3' miRNA: 3'- -CCUGUaCGCA----UAGU---------UGCG--------CGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 44886 | 0.68 | 0.601236 |
Target: 5'- --cCcgGCGUcAUCGGgGCGgGCGGCGg -3' miRNA: 3'- ccuGuaCGCA-UAGUUgCGCgCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 39115 | 0.68 | 0.601236 |
Target: 5'- gGGACGUG-GUggccggccagAUCAACGuCG-GCGGCAc -3' miRNA: 3'- -CCUGUACgCA----------UAGUUGC-GCgCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 3194 | 0.68 | 0.601236 |
Target: 5'- -cGC-UGCGcGUCGGCGaGCGCGGCc -3' miRNA: 3'- ccUGuACGCaUAGUUGCgCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 27106 | 0.69 | 0.54614 |
Target: 5'- -----gGCGcuUCGACGgGCGCGGCGa -3' miRNA: 3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 9517 | 0.69 | 0.54614 |
Target: 5'- cGGGCugaauCGUG-CGGcCGUGCGCGGCAg -3' miRNA: 3'- -CCUGuac--GCAUaGUU-GCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 39503 | 0.69 | 0.557053 |
Target: 5'- uGGGCAgaguuuaagGCGaagAUgGAaGCGCGCGGCGu -3' miRNA: 3'- -CCUGUa--------CGCa--UAgUUgCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 19853 | 0.69 | 0.54614 |
Target: 5'- cGACgAUGCGaacaagGUCAcgGCGaGCGCGGCGa -3' miRNA: 3'- cCUG-UACGCa-----UAGU--UGCgCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 8740 | 0.69 | 0.524531 |
Target: 5'- cGGCGaGCGggGUCGagacguuuuuaACGCuGCGCGGCAg -3' miRNA: 3'- cCUGUaCGCa-UAGU-----------UGCG-CGCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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