miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 9374 0.69 0.54614
Target:  5'- cGGCGgcUGCGggaauuUCAGCGCG-GCGGCc -3'
miRNA:   3'- cCUGU--ACGCau----AGUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 34040 0.69 0.54614
Target:  5'- uGGGCcgGCGcggcgcgcUCAAUGCGCucgacGCGGCGc -3'
miRNA:   3'- -CCUGuaCGCau------AGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39503 0.69 0.557053
Target:  5'- uGGGCAgaguuuaagGCGaagAUgGAaGCGCGCGGCGu -3'
miRNA:   3'- -CCUGUa--------CGCa--UAgUUgCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 36626 0.69 0.557053
Target:  5'- cGACG-GCGcaguUUAACaGUGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCau--AGUUG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 5600 0.69 0.568027
Target:  5'- -----gGCGUccGUCAGCGCaucgGCGCGGCu -3'
miRNA:   3'- ccuguaCGCA--UAGUUGCG----CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 859 0.68 0.579054
Target:  5'- cGGACA-GCGUacccGUCGugccggccgGCGCuucguucaGCGCGGCGg -3'
miRNA:   3'- -CCUGUaCGCA----UAGU---------UGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10818 0.68 0.579054
Target:  5'- cGGGCAUGUGUcagggacgcAUCAguaucACGUuaCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCA---------UAGU-----UGCGc-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 20711 0.68 0.579054
Target:  5'- cGGuCGUGaCGcagccgGUCAGCGCGC-CGGCc -3'
miRNA:   3'- -CCuGUAC-GCa-----UAGUUGCGCGcGCCGu -5'
24322 5' -54.4 NC_005263.2 + 39115 0.68 0.601236
Target:  5'- gGGACGUG-GUggccggccagAUCAACGuCG-GCGGCAc -3'
miRNA:   3'- -CCUGUACgCA----------UAGUUGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 14169 0.68 0.601236
Target:  5'- cGGGCcgGCGgc-CggUGUGCGCGaGCu -3'
miRNA:   3'- -CCUGuaCGCauaGuuGCGCGCGC-CGu -5'
24322 5' -54.4 NC_005263.2 + 3194 0.68 0.601236
Target:  5'- -cGC-UGCGcGUCGGCGaGCGCGGCc -3'
miRNA:   3'- ccUGuACGCaUAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 44886 0.68 0.601236
Target:  5'- --cCcgGCGUcAUCGGgGCGgGCGGCGg -3'
miRNA:   3'- ccuGuaCGCA-UAGUUgCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29977 0.68 0.601236
Target:  5'- cGGGCA-GCGcgAUCAGCGCGUagaacuCGGCc -3'
miRNA:   3'- -CCUGUaCGCa-UAGUUGCGCGc-----GCCGu -5'
24322 5' -54.4 NC_005263.2 + 25417 0.68 0.612372
Target:  5'- aGACA-GCcauccUCGGCGCGUGCGGUg -3'
miRNA:   3'- cCUGUaCGcau--AGUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 18449 0.68 0.612372
Target:  5'- cGAgGUGCGcgugaagCAGC-CGCGCGGCu -3'
miRNA:   3'- cCUgUACGCaua----GUUGcGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 3896 0.68 0.612372
Target:  5'- uGGuCAUG-GUGUCGugguaGCGcCGgGCGGCAa -3'
miRNA:   3'- -CCuGUACgCAUAGU-----UGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 12850 0.68 0.612372
Target:  5'- cGGGCAgccCGUAUucgauggggcCGGCGUGCGUGGUg -3'
miRNA:   3'- -CCUGUac-GCAUA----------GUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 41148 0.68 0.612372
Target:  5'- cGGAaaCcgGCGUucgcgCGGCGUGgGCGGCc -3'
miRNA:   3'- -CCU--GuaCGCAua---GUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 43301 0.68 0.623526
Target:  5'- cGGGCG-GCGUAUgAgcgucACGCGaCGCGGg- -3'
miRNA:   3'- -CCUGUaCGCAUAgU-----UGCGC-GCGCCgu -5'
24322 5' -54.4 NC_005263.2 + 24782 0.68 0.623526
Target:  5'- cGGGCGgcgucgGCGgcUCGcCGgGCGuCGGCGg -3'
miRNA:   3'- -CCUGUa-----CGCauAGUuGCgCGC-GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.