Results 81 - 100 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24322 | 5' | -54.4 | NC_005263.2 | + | 10757 | 0.71 | 0.422404 |
Target: 5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3' miRNA: 3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 33405 | 0.71 | 0.412851 |
Target: 5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3' miRNA: 3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 39070 | 0.71 | 0.412851 |
Target: 5'- cGGACGU-CGUAgccggcUCGcCGuCGCGCGGCAc -3' miRNA: 3'- -CCUGUAcGCAU------AGUuGC-GCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 1593 | 0.72 | 0.403432 |
Target: 5'- uGGACGUGCcgagCAGCGCG-GCGGaCAc -3' miRNA: 3'- -CCUGUACGcauaGUUGCGCgCGCC-GU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 38433 | 0.72 | 0.394151 |
Target: 5'- cGACGUGCGUu---ACGUGCucgGCGGCGa -3' miRNA: 3'- cCUGUACGCAuaguUGCGCG---CGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 47402 | 0.72 | 0.39323 |
Target: 5'- uGAaaaaGUGCGUcgaguucAUCGGCGCGCuCGGCAa -3' miRNA: 3'- cCUg---UACGCA-------UAGUUGCGCGcGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 29214 | 0.72 | 0.376008 |
Target: 5'- aGGCcgGCGcguauuugccGUCGGCGCGCaGCGGCGc -3' miRNA: 3'- cCUGuaCGCa---------UAGUUGCGCG-CGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 8835 | 0.72 | 0.358437 |
Target: 5'- cGGCGUGCG-AUCAAgcauCGCGCGCaGCu -3' miRNA: 3'- cCUGUACGCaUAGUU----GCGCGCGcCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 21180 | 0.73 | 0.34987 |
Target: 5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3' miRNA: 3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 41708 | 0.73 | 0.34987 |
Target: 5'- cGGGCAaGgagaacauccuCGUAcUCGACGCGgGCGGCAa -3' miRNA: 3'- -CCUGUaC-----------GCAU-AGUUGCGCgCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 31606 | 0.73 | 0.34145 |
Target: 5'- uGGuCAUGCcgGUcgCGACGgcCGCGCGGCGc -3' miRNA: 3'- -CCuGUACG--CAuaGUUGC--GCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 32989 | 0.73 | 0.317075 |
Target: 5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3' miRNA: 3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 33418 | 0.74 | 0.284462 |
Target: 5'- aGGACGgccagGCGUccgacuucguguucGUCGGCGUGUGgGGCAa -3' miRNA: 3'- -CCUGUa----CGCA--------------UAGUUGCGCGCgCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 21165 | 0.75 | 0.258571 |
Target: 5'- cGGCA-GCGacgucAUCAACGUGCGUGGCGa -3' miRNA: 3'- cCUGUaCGCa----UAGUUGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 43830 | 0.75 | 0.257898 |
Target: 5'- cGGGCAcgaUGUucGUGUCGaccgggcgcaacaACGUGCGCGGCAu -3' miRNA: 3'- -CCUGU---ACG--CAUAGU-------------UGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 12106 | 0.76 | 0.23278 |
Target: 5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3' miRNA: 3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 47372 | 0.77 | 0.187688 |
Target: 5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3' miRNA: 3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 29310 | 0.78 | 0.163568 |
Target: 5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3' miRNA: 3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 24536 | 0.78 | 0.154725 |
Target: 5'- cGGGCAacgGCGg--CGGCGCGgGCGGCGg -3' miRNA: 3'- -CCUGUa--CGCauaGUUGCGCgCGCCGU- -5' |
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24322 | 5' | -54.4 | NC_005263.2 | + | 44388 | 1.11 | 0.00083 |
Target: 5'- uGGACAUGCGUAUCAACGCGCGCGGCAu -3' miRNA: 3'- -CCUGUACGCAUAGUUGCGCGCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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