miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 20979 0.69 0.54614
Target:  5'- cGACGcggcugcgcgccUGCGcGUCGACGUGC-CGGCGu -3'
miRNA:   3'- cCUGU------------ACGCaUAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21165 0.75 0.258571
Target:  5'- cGGCA-GCGacgucAUCAACGUGCGUGGCGa -3'
miRNA:   3'- cCUGUaCGCa----UAGUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21180 0.73 0.34987
Target:  5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3'
miRNA:   3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21626 0.67 0.679204
Target:  5'- aGGCgcaGUGCGg--CGACGCGCGgcguaUGGCAc -3'
miRNA:   3'- cCUG---UACGCauaGUUGCGCGC-----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 22172 0.68 0.634687
Target:  5'- cGACGUGaCGUA-CGAUGCGaCGacCGGCAa -3'
miRNA:   3'- cCUGUAC-GCAUaGUUGCGC-GC--GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 22513 0.66 0.733721
Target:  5'- cGGCGcacuccguUGCG-AUCAGCGUGacggGCGGCGc -3'
miRNA:   3'- cCUGU--------ACGCaUAGUUGCGCg---CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 24536 0.78 0.154725
Target:  5'- cGGGCAacgGCGg--CGGCGCGgGCGGCGg -3'
miRNA:   3'- -CCUGUa--CGCauaGUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 24782 0.68 0.623526
Target:  5'- cGGGCGgcgucgGCGgcUCGcCGgGCGuCGGCGg -3'
miRNA:   3'- -CCUGUa-----CGCauAGUuGCgCGC-GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 25276 0.67 0.656993
Target:  5'- -uGCAUGCcgAUCcGCGCGCGCGaCAg -3'
miRNA:   3'- ccUGUACGcaUAGuUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 25417 0.68 0.612372
Target:  5'- aGACA-GCcauccUCGGCGCGUGCGGUg -3'
miRNA:   3'- cCUGUaCGcau--AGUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 25694 0.66 0.733721
Target:  5'- cGGACAcgGCGagcacggCGGCGCGUacguucGCGGCc -3'
miRNA:   3'- -CCUGUa-CGCaua----GUUGCGCG------CGCCGu -5'
24322 5' -54.4 NC_005263.2 + 26183 0.67 0.690245
Target:  5'- aGGACGgucUGCGg--CcGCGCG-GCGGCc -3'
miRNA:   3'- -CCUGU---ACGCauaGuUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 27106 0.69 0.54614
Target:  5'- -----gGCGcuUCGACGgGCGCGGCGa -3'
miRNA:   3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 27328 0.66 0.70123
Target:  5'- cGACGcGCcgacgAUCAGCG-GCGCGGCc -3'
miRNA:   3'- cCUGUaCGca---UAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 28424 0.66 0.722979
Target:  5'- cGGCAcGCGcGUgAACGUcgcgggcaGCGCGGCGu -3'
miRNA:   3'- cCUGUaCGCaUAgUUGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29014 0.66 0.744357
Target:  5'- cGGCAgUGCGUugcgcaccgCGACGCcguacugacGCGCGGCc -3'
miRNA:   3'- cCUGU-ACGCAua-------GUUGCG---------CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 29214 0.72 0.376008
Target:  5'- aGGCcgGCGcguauuugccGUCGGCGCGCaGCGGCGc -3'
miRNA:   3'- cCUGuaCGCa---------UAGUUGCGCG-CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29255 0.66 0.722979
Target:  5'- aGGCAcGCGUuguUC-ACGCGgucgaaCGCGGCAa -3'
miRNA:   3'- cCUGUaCGCAu--AGuUGCGC------GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29310 0.78 0.163568
Target:  5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3'
miRNA:   3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29977 0.68 0.601236
Target:  5'- cGGGCA-GCGcgAUCAGCGCGUagaacuCGGCc -3'
miRNA:   3'- -CCUGUaCGCa-UAGUUGCGCGc-----GCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.