miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 37610 0.7 0.513848
Target:  5'- -aACGUGCGcuUCGACGgcaagcaccUGCGCGGCGa -3'
miRNA:   3'- ccUGUACGCauAGUUGC---------GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 37433 0.67 0.656993
Target:  5'- --uCGU-CGUcauacGUCGGCGCGCGCGGUc -3'
miRNA:   3'- ccuGUAcGCA-----UAGUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 37405 0.7 0.492759
Target:  5'- cGACGUGC--AUC-GCGuCGCGCGGCc -3'
miRNA:   3'- cCUGUACGcaUAGuUGC-GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 36626 0.69 0.557053
Target:  5'- cGACG-GCGcaguUUAACaGUGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCau--AGUUG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 35985 0.66 0.712145
Target:  5'- uGGAgCGcGCGUAaUGGCGCGCGCGccGCu -3'
miRNA:   3'- -CCU-GUaCGCAUaGUUGCGCGCGC--CGu -5'
24322 5' -54.4 NC_005263.2 + 35530 0.67 0.645846
Target:  5'- cGAC-UGCGcccggCGGCGCGCG-GGCGg -3'
miRNA:   3'- cCUGuACGCaua--GUUGCGCGCgCCGU- -5'
24322 5' -54.4 NC_005263.2 + 34040 0.69 0.54614
Target:  5'- uGGGCcgGCGcggcgcgcUCAAUGCGCucgacGCGGCGc -3'
miRNA:   3'- -CCUGuaCGCau------AGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33996 0.7 0.492759
Target:  5'- aGGCcgGcCGUGUUGGCuGCGuCGCGGCGc -3'
miRNA:   3'- cCUGuaC-GCAUAGUUG-CGC-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33953 0.66 0.722979
Target:  5'- cGACAacUGCGggcCGGCGaguGUGCGGCGa -3'
miRNA:   3'- cCUGU--ACGCauaGUUGCg--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33679 0.7 0.513848
Target:  5'- cGGGC--GCGaAUCuugGCGCaGCGCGGCGg -3'
miRNA:   3'- -CCUGuaCGCaUAGu--UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33418 0.74 0.284462
Target:  5'- aGGACGgccagGCGUccgacuucguguucGUCGGCGUGUGgGGCAa -3'
miRNA:   3'- -CCUGUa----CGCA--------------UAGUUGCGCGCgCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33405 0.71 0.412851
Target:  5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3'
miRNA:   3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5'
24322 5' -54.4 NC_005263.2 + 32989 0.73 0.317075
Target:  5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3'
miRNA:   3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 32907 0.67 0.656993
Target:  5'- cGGAa--GCGcuugcCGACGuCGCGCGGCGg -3'
miRNA:   3'- -CCUguaCGCaua--GUUGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 32677 0.68 0.623526
Target:  5'- cGGCG-GCGaUGUCGACGUGCGuCaGCAg -3'
miRNA:   3'- cCUGUaCGC-AUAGUUGCGCGC-GcCGU- -5'
24322 5' -54.4 NC_005263.2 + 32547 0.67 0.645846
Target:  5'- --uUcgGCGU-UCAGCGCGCGCGucuGCGc -3'
miRNA:   3'- ccuGuaCGCAuAGUUGCGCGCGC---CGU- -5'
24322 5' -54.4 NC_005263.2 + 32084 0.66 0.70123
Target:  5'- -aACGUGCGUc---ACGUGCGgCGGCGu -3'
miRNA:   3'- ccUGUACGCAuaguUGCGCGC-GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 31606 0.73 0.34145
Target:  5'- uGGuCAUGCcgGUcgCGACGgcCGCGCGGCGc -3'
miRNA:   3'- -CCuGUACG--CAuaGUUGC--GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 30436 0.66 0.70123
Target:  5'- cGGuCGaGCGcgagCAGCGUgaGCGCGGCGg -3'
miRNA:   3'- -CCuGUaCGCaua-GUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 30269 0.71 0.441902
Target:  5'- cGGCGaagcgcUGCGcaAUCGGgcCGCGCGCGGCAu -3'
miRNA:   3'- cCUGU------ACGCa-UAGUU--GCGCGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.