miRNA display CGI


Results 61 - 80 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 26183 0.67 0.690245
Target:  5'- aGGACGgucUGCGg--CcGCGCG-GCGGCc -3'
miRNA:   3'- -CCUGU---ACGCauaGuUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 4553 0.67 0.690245
Target:  5'- cGACG-GCGgcAUUGACGCGUauauaGCGGCAa -3'
miRNA:   3'- cCUGUaCGCa-UAGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43208 0.67 0.694647
Target:  5'- cGACGgcGCGcUAUCGcaGCGCGCgcuacauggugagcgGCGGCAg -3'
miRNA:   3'- cCUGUa-CGC-AUAGU--UGCGCG---------------CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 35985 0.66 0.712145
Target:  5'- uGGAgCGcGCGUAaUGGCGCGCGCGccGCu -3'
miRNA:   3'- -CCU-GUaCGCAUaGUUGCGCGCGC--CGu -5'
24322 5' -54.4 NC_005263.2 + 18912 0.66 0.712145
Target:  5'- cGGCcUGCGUcgagcgUGAC-CGCGCGGCAc -3'
miRNA:   3'- cCUGuACGCAua----GUUGcGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 18449 0.68 0.612372
Target:  5'- cGAgGUGCGcgugaagCAGC-CGCGCGGCu -3'
miRNA:   3'- cCUgUACGCaua----GUUGcGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 12850 0.68 0.612372
Target:  5'- cGGGCAgccCGUAUucgauggggcCGGCGUGCGUGGUg -3'
miRNA:   3'- -CCUGUac-GCAUA----------GUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 1593 0.72 0.403432
Target:  5'- uGGACGUGCcgagCAGCGCG-GCGGaCAc -3'
miRNA:   3'- -CCUGUACGcauaGUUGCGCgCGCC-GU- -5'
24322 5' -54.4 NC_005263.2 + 39070 0.71 0.412851
Target:  5'- cGGACGU-CGUAgccggcUCGcCGuCGCGCGGCAc -3'
miRNA:   3'- -CCUGUAcGCAU------AGUuGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9822 0.71 0.432089
Target:  5'- aGGGCGUGCaucacGUUGACGaacgGCGCGGCGc -3'
miRNA:   3'- -CCUGUACGca---UAGUUGCg---CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47709 0.71 0.451841
Target:  5'- aGGAuCGUGCGc-UCuACGCGCuCGGCAa -3'
miRNA:   3'- -CCU-GUACGCauAGuUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 16404 0.7 0.473099
Target:  5'- cGGCAUcGCGggugcgguacucggcGUCGGCGCugGCGCGGCGg -3'
miRNA:   3'- cCUGUA-CGCa--------------UAGUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 3491 0.7 0.492759
Target:  5'- -cGCA-GCGaGUCGGgcaaguuguCGCGCGCGGCAa -3'
miRNA:   3'- ccUGUaCGCaUAGUU---------GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2673 0.7 0.513848
Target:  5'- aGGCGUGCGUuguggUAGCugauCGCGCGGCc -3'
miRNA:   3'- cCUGUACGCAua---GUUGc---GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 46824 0.7 0.513848
Target:  5'- -----cGCGUAacgCAACGCGCGCcaGGCGg -3'
miRNA:   3'- ccuguaCGCAUa--GUUGCGCGCG--CCGU- -5'
24322 5' -54.4 NC_005263.2 + 37610 0.7 0.513848
Target:  5'- -aACGUGCGcuUCGACGgcaagcaccUGCGCGGCGa -3'
miRNA:   3'- ccUGUACGCauAGUUGC---------GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11802 0.69 0.524531
Target:  5'- aGGACGUcGCGUGUCGcUGCauguCGUGGCu -3'
miRNA:   3'- -CCUGUA-CGCAUAGUuGCGc---GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 39115 0.68 0.601236
Target:  5'- gGGACGUG-GUggccggccagAUCAACGuCG-GCGGCAc -3'
miRNA:   3'- -CCUGUACgCA----------UAGUUGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44886 0.68 0.601236
Target:  5'- --cCcgGCGUcAUCGGgGCGgGCGGCGg -3'
miRNA:   3'- ccuGuaCGCA-UAGUUgCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 41148 0.68 0.612372
Target:  5'- cGGAaaCcgGCGUucgcgCGGCGUGgGCGGCc -3'
miRNA:   3'- -CCU--GuaCGCAua---GUUGCGCgCGCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.