miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 3491 0.7 0.492759
Target:  5'- -cGCA-GCGaGUCGGgcaaguuguCGCGCGCGGCAa -3'
miRNA:   3'- ccUGUaCGCaUAGUU---------GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 16404 0.7 0.473099
Target:  5'- cGGCAUcGCGggugcgguacucggcGUCGGCGCugGCGCGGCGg -3'
miRNA:   3'- cCUGUA-CGCa--------------UAGUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47709 0.71 0.451841
Target:  5'- aGGAuCGUGCGc-UCuACGCGCuCGGCAa -3'
miRNA:   3'- -CCU-GUACGCauAGuUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9822 0.71 0.432089
Target:  5'- aGGGCGUGCaucacGUUGACGaacgGCGCGGCGc -3'
miRNA:   3'- -CCUGUACGca---UAGUUGCg---CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39070 0.71 0.412851
Target:  5'- cGGACGU-CGUAgccggcUCGcCGuCGCGCGGCAc -3'
miRNA:   3'- -CCUGUAcGCAU------AGUuGC-GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 1593 0.72 0.403432
Target:  5'- uGGACGUGCcgagCAGCGCG-GCGGaCAc -3'
miRNA:   3'- -CCUGUACGcauaGUUGCGCgCGCC-GU- -5'
24322 5' -54.4 NC_005263.2 + 38433 0.72 0.394151
Target:  5'- cGACGUGCGUu---ACGUGCucgGCGGCGa -3'
miRNA:   3'- cCUGUACGCAuaguUGCGCG---CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11802 0.69 0.524531
Target:  5'- aGGACGUcGCGUGUCGcUGCauguCGUGGCu -3'
miRNA:   3'- -CCUGUA-CGCAUAGUuGCGc---GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 46100 0.69 0.54614
Target:  5'- uGACGUcGgGUAUCAucCGCGC-CGGCGu -3'
miRNA:   3'- cCUGUA-CgCAUAGUu-GCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 12850 0.68 0.612372
Target:  5'- cGGGCAgccCGUAUucgauggggcCGGCGUGCGUGGUg -3'
miRNA:   3'- -CCUGUac-GCAUA----------GUUGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 41148 0.68 0.612372
Target:  5'- cGGAaaCcgGCGUucgcgCGGCGUGgGCGGCc -3'
miRNA:   3'- -CCU--GuaCGCAua---GUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 44886 0.68 0.601236
Target:  5'- --cCcgGCGUcAUCGGgGCGgGCGGCGg -3'
miRNA:   3'- ccuGuaCGCA-UAGUUgCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39115 0.68 0.601236
Target:  5'- gGGACGUG-GUggccggccagAUCAACGuCG-GCGGCAc -3'
miRNA:   3'- -CCUGUACgCA----------UAGUUGC-GCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29977 0.68 0.601236
Target:  5'- cGGGCA-GCGcgAUCAGCGCGUagaacuCGGCc -3'
miRNA:   3'- -CCUGUaCGCa-UAGUUGCGCGc-----GCCGu -5'
24322 5' -54.4 NC_005263.2 + 3194 0.68 0.601236
Target:  5'- -cGC-UGCGcGUCGGCGaGCGCGGCc -3'
miRNA:   3'- ccUGuACGCaUAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 859 0.68 0.579054
Target:  5'- cGGACA-GCGUacccGUCGugccggccgGCGCuucguucaGCGCGGCGg -3'
miRNA:   3'- -CCUGUaCGCA----UAGU---------UGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 5600 0.69 0.568027
Target:  5'- -----gGCGUccGUCAGCGCaucgGCGCGGCu -3'
miRNA:   3'- ccuguaCGCA--UAGUUGCG----CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 36626 0.69 0.557053
Target:  5'- cGACG-GCGcaguUUAACaGUGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCau--AGUUG-CGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 34040 0.69 0.54614
Target:  5'- uGGGCcgGCGcggcgcgcUCAAUGCGCucgacGCGGCGc -3'
miRNA:   3'- -CCUGuaCGCau------AGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 8835 0.72 0.358437
Target:  5'- cGGCGUGCG-AUCAAgcauCGCGCGCaGCu -3'
miRNA:   3'- cCUGUACGCaUAGUU----GCGCGCGcCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.