miRNA display CGI


Results 61 - 80 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 27106 0.69 0.54614
Target:  5'- -----gGCGcuUCGACGgGCGCGGCGa -3'
miRNA:   3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 19853 0.69 0.54614
Target:  5'- cGACgAUGCGaacaagGUCAcgGCGaGCGCGGCGa -3'
miRNA:   3'- cCUG-UACGCa-----UAGU--UGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9517 0.69 0.54614
Target:  5'- cGGGCugaauCGUG-CGGcCGUGCGCGGCAg -3'
miRNA:   3'- -CCUGuac--GCAUaGUU-GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 20979 0.69 0.54614
Target:  5'- cGACGcggcugcgcgccUGCGcGUCGACGUGC-CGGCGu -3'
miRNA:   3'- cCUGU------------ACGCaUAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 39503 0.69 0.557053
Target:  5'- uGGGCAgaguuuaagGCGaagAUgGAaGCGCGCGGCGu -3'
miRNA:   3'- -CCUGUa--------CGCa--UAgUUgCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10818 0.68 0.579054
Target:  5'- cGGGCAUGUGUcagggacgcAUCAguaucACGUuaCGCGGCAu -3'
miRNA:   3'- -CCUGUACGCA---------UAGU-----UGCGc-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44835 0.7 0.472075
Target:  5'- cGGACugcgagGCGaUAcUCGACGCcugucuGCGCGGCGa -3'
miRNA:   3'- -CCUGua----CGC-AU-AGUUGCG------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 30269 0.71 0.441902
Target:  5'- cGGCGaagcgcUGCGcaAUCGGgcCGCGCGCGGCAu -3'
miRNA:   3'- cCUGU------ACGCa-UAGUU--GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10757 0.71 0.422404
Target:  5'- -cGCAUGCGgccGUCGGCaucaaagcuGCGCGCGGUc -3'
miRNA:   3'- ccUGUACGCa--UAGUUG---------CGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 25694 0.66 0.733721
Target:  5'- cGGACAcgGCGagcacggCGGCGCGUacguucGCGGCc -3'
miRNA:   3'- -CCUGUa-CGCaua----GUUGCGCG------CGCCGu -5'
24322 5' -54.4 NC_005263.2 + 29310 0.78 0.163568
Target:  5'- cGGCAUGCG---CAuCGCGCGCGGCGa -3'
miRNA:   3'- cCUGUACGCauaGUuGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47372 0.77 0.187688
Target:  5'- uGGGCGgcGCGU-UCGAUGCGCGCGaGCAc -3'
miRNA:   3'- -CCUGUa-CGCAuAGUUGCGCGCGC-CGU- -5'
24322 5' -54.4 NC_005263.2 + 12106 0.76 0.23278
Target:  5'- uGGCAUGCGcagCGGCGCGCGCGcCAu -3'
miRNA:   3'- cCUGUACGCauaGUUGCGCGCGCcGU- -5'
24322 5' -54.4 NC_005263.2 + 32989 0.73 0.317075
Target:  5'- -cGCGcUGCGUAUU--CGCGCGCGGCc -3'
miRNA:   3'- ccUGU-ACGCAUAGuuGCGCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 31606 0.73 0.34145
Target:  5'- uGGuCAUGCcgGUcgCGACGgcCGCGCGGCGc -3'
miRNA:   3'- -CCuGUACG--CAuaGUUGC--GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 41708 0.73 0.34987
Target:  5'- cGGGCAaGgagaacauccuCGUAcUCGACGCGgGCGGCAa -3'
miRNA:   3'- -CCUGUaC-----------GCAU-AGUUGCGCgCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 21180 0.73 0.34987
Target:  5'- gGGGCcgGaCGcg--GACGCGCGCGGCGc -3'
miRNA:   3'- -CCUGuaC-GCauagUUGCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29214 0.72 0.376008
Target:  5'- aGGCcgGCGcguauuugccGUCGGCGCGCaGCGGCGc -3'
miRNA:   3'- cCUGuaCGCa---------UAGUUGCGCG-CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47402 0.72 0.39323
Target:  5'- uGAaaaaGUGCGUcgaguucAUCGGCGCGCuCGGCAa -3'
miRNA:   3'- cCUg---UACGCA-------UAGUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33405 0.71 0.412851
Target:  5'- cGGAUcgGCGUcgAUCGccuugagcgccGCGCGCGCGuaGCGg -3'
miRNA:   3'- -CCUGuaCGCA--UAGU-----------UGCGCGCGC--CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.